Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0328 ATGTCTGAGTGTTTCGGAACAGATATTGCTAACATGAAGGACTCTTGGTTTTTCGACAATAACTTCAACGGTCTGTCAGATGATATTTTTGATGATGTCGTGGGTTTTTTTGATTTCCCACTGGAAGATGTAGAAGATGACTGGGATTCTCAATTTAAATGCCTTGAACACCAACATTCTGAGGTTTTTTCAGCATCATCAAATGGGCTATGTGCCAAAACACAAACTGAAAACCCCCAATTTGGGACGGAGTTCTCTGTTTCTTGTAATGGGATTTCCCCAATCAAACAGCTGGCAACGGCTCCTGGACCAACATATGGAAAAACCATTCCCCTCAAGAATGTCACTTTCAATGGAAAAGATTTGCATCGATTCCGAACCTACAGCCCGGTTTCAGTTTTTGAAAGCAGCAGTTCTTCCTCTGTTGAGAATTCGAGCTTTGATCGACCTGTCATTCCAGTAAAGCGTGCTCGAAGTAAACGGCATCGTCGAATAAGTTTCAGTCCTCTATTTTCCATTCCTTTCGTCCAGGCTTTGCAAAAACAGCAAAGGACATCTGCCTCTGAATCAGATTTTGGAACAAATGTTGCTGGGAATATGTCAAACAAAGTAAAAAGCCACAAGAAAAAGGATTTGTCCCTGCTATCAGAAGATGTTGAGATAATGAGATCCTCACATCTGGTGTCAGATCCACCAAGGAAATGCATGCATTGTGAGGTGACAAAGACCCCACAATGGAGAGAGGGACCTATGGGTCCCAAAACACTGTGCAACGCTTGTGGTGTTCGGTACAGGTCTGGCCGCCTCTTTCCGGAATACCGGCCGGCAGCCAGCCCAACTTTTGTTGCATCATTGCACTCAAACTGTCACAAGAAGGTCGTGGAGATGAGAAGCAGAGTCCAGGAGGGTGTTAGGGGTTCTGTGTTTGCTTCATCAAATCTCCATGAAAATTCTGTAGGATAA 963 0.4393 MSECFGTDIANMKDSWFFDNNFNGLSDDIFDDVVGFFDFPLEDVEDDWDSQFKCLEHQHSEVFSASSNGLCAKTQTENPQFGTEFSVSCNGISPIKQLATAPGPTYGKTIPLKNVTFNGKDLHRFRTYSPVSVFESSSSSSVENSSFDRPVIPVKRARSKRHRRISFSPLFSIPFVQALQKQQRTSASESDFGTNVAGNMSNKVKSHKKKDLSLLSEDVEIMRSSHLVSDPPRKCMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVASLHSNCHKKVVEMRSRVQEGVRGSVFASSNLHENSVG* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0328 320 MobiDBLite consensus disorder prediction 186 209 - -
Vra4g0328 320 CDD ZnF_GATA 234 281 IPR000679 GO:0006355|GO:0043565
Vra4g0328 320 Gene3D - 228 301 IPR013088 GO:0006355|GO:0008270
Vra4g0328 320 Pfam GATA zinc finger 235 268 IPR000679 GO:0006355|GO:0043565
Vra4g0328 320 PANTHER GATA TRANSCRIPTION FACTOR 30 299 - -
Vra4g0328 320 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 230 291 - -
Vra4g0328 320 MobiDBLite consensus disorder prediction 186 202 - -
Vra4g0328 320 ProSiteProfiles GATA-type zinc finger domain profile. 229 265 IPR000679 GO:0006355|GO:0043565
Vra4g0328 320 PANTHER GATA TRANSCRIPTION FACTOR 13-RELATED 30 299 - -
Vra4g0328 320 ProSitePatterns GATA-type zinc finger domain. 235 260 IPR000679 GO:0006355|GO:0043565
Vra4g0328 320 SMART GATA_3 229 279 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0328 Vra-Chr4 6000978 6005252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0328 19 309 C2C2-Gata Transcription Factor Family AT1G08010 36.333 2.98e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vra4g0328 GATA 3.6e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0328 - - gmx:100778675 460.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0328 4 6000978 6005252 Vra4g0328 4 6000978 6005252 ECH