Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0327 ATGAAGGAAACCGAGAAGAGTTTGGATCCGCAGCTGTGGCACGCATGCGCCGGCGGCATGGTTCAGATGCCGCCGGTGAACTCCAAGGTATTCTACTTTCCTCAGGGGCATGCGGAACACGCGCAGTCCAACCTTGATTTTGGAGCCTCCAGGATTCCGATCCCGCCGCTCGTTCTCTGCCGCGTGGCGGCTGTTAAATTCCTCGCAGACCCCGAAACCGACGAGGTCTTCGCCAGGTTAAGGTTGGTTCCTCTCAGAAACACCGAACTTGACCACGAAGACAGCGACAAGGTTGACGGTAACGGCCCGGAGGGTTCTGAAAAGCCAGCTTCGTTCGCGAAGACGTTAACTCAATCGGACGCGAACAATGGTGGGGGATTCTCCGTGCCGAGATACTGCGCGGAGACCATTTTCCCGCGGCTGGACTACTCGGCGGAGCCGCCGGTGCAGACGGTGATAGCGAAGGACGTGCACGGCGAGGTGTGGAAGTTCCGGCACATTTACCGAGGGACGCCGCGTCGGCACTTACTTACCACCGGGTGGAGTAGTTTCGTGAACCAGAAGAAACTGGTTGCTGGGGATTCTATAGTGTTTCTGCGGGCAGAGAATGGGGATCTCTGCGTTGGGATTCGTAGGGCGAAGAGAGGTGGTGTTGGTGGTCCCGAGGCGCCGTGTGGGTGGAGTTCTGGTGGTGGTGGGATTGGGCCTTACGGGGCCTTTTCAGCTTTTTTGAGGGAGGAGAGCAAGGTGGTGAGGAATGGGTGTGGGAGGCCGAAAGTGAGTGGTGAGTCTGTGAGGGAGGCTATTACTTTGGCTGCTAACAACCAAACCTTTGAGGTTGTTTATTATCCTCGAGCCAACACTCCTGAGTTTTGTATTAGGACTTCTGCTGTTAGGGGTGCTATGAGGATTCAGTGGTGCTCTGGGTTGAGGTTTAAGATGCCCTTTGAGACTGAGGACTCTTCCAGGATAAGCTGGTTCATGGGCACCATAGCTTCTGTTCAGGTTCTTGATCCTATCCGCTGGCCCAATTCGCCTTGGAGGCTTCTTCAGGTTACGTGGGATGAACCAGATTTGCTCCATAATGTGAAGCGCGTAAGTCCATGGTTGGTTGAGTTGGTATCTAACATTCCAGTGATCCATCTGGCACCATTCTCTCCACCAAGGAAGAAGCTGAGGTTTCCACAACACCCAGAGTTTCCCCTTGATGTTCAATTTCCGATACCAACGTTTTCAGGCAACCCCTTTGGGTCTAGCACTAGCAGCCCCTTGTGTTGTCTATCTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTTTATCAGATCTCCACCTTAACCATAATAAGCTGCAGTTGGGGTTGCTCCCAACCAACGTTCGCCAGCTTGATTTGCAAAATGGGATTTCTAATGTCAACATCACCAACCATGGTAAGAGTAAAGAAAGTCTATCGTGCTTGCTGACCATGGGAAGTCCACGCAAGAGTTTGGAGAAATCTGATCAAGTGAAGACACACCAATTTTTGCTTTTCGGTCAACCGATACTCACCGAGCAACAAATTTCTAGATCTTCTAGTGATGTGTTGTCTCAGAATTGCACCGCAACAGATGATGAAAACAAGGAGAAGAAGGAGATGGGATTCCTCAGTGACTCCCAGTCTTCAGTTTCCCCAGGAAAATCATCTTCCACCGCCGAGTTCTCTTGGCAACTCGGTTCTGACACCAGTCATTGCAAGGTTTTCATGGACACAGAAGATGTAGGACGGACCCTTGACTTGTCCTGTCTTGCTTCTTATGATGAACTTTACATGAGACTGGCCACCATGTTTGGAATAGAACGCTCTGAGATGTTGAGTCATGTTCTCTACCGCGATGCAACCGGTGCTCTCAAACAAACAGGAGAAGAACCATTCAGTGAGTTCACCAAGACCGCTAAAAGATTGACAATTCTGAGTGATTCAAGCAGCAAAGATAGCAGAAGGGTTTGGATCACAGGAACTCGGAATGCTGAACATGGATTGGATGCTACTTCGAATAAGACAGGTCCTATGAGCATATTTGCTTAA 2085 0.506 MKETEKSLDPQLWHACAGGMVQMPPVNSKVFYFPQGHAEHAQSNLDFGASRIPIPPLVLCRVAAVKFLADPETDEVFARLRLVPLRNTELDHEDSDKVDGNGPEGSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKRGGVGGPEAPCGWSSGGGGIGPYGAFSAFLREESKVVRNGCGRPKVSGESVREAITLAANNQTFEVVYYPRANTPEFCIRTSAVRGAMRIQWCSGLRFKMPFETEDSSRISWFMGTIASVQVLDPIRWPNSPWRLLQVTWDEPDLLHNVKRVSPWLVELVSNIPVIHLAPFSPPRKKLRFPQHPEFPLDVQFPIPTFSGNPFGSSTSSPLCCLSDNAPAGIQGARHAQIGISLSDLHLNHNKLQLGLLPTNVRQLDLQNGISNVNITNHGKSKESLSCLLTMGSPRKSLEKSDQVKTHQFLLFGQPILTEQQISRSSSDVLSQNCTATDDENKEKKEMGFLSDSQSSVSPGKSSSTAEFSWQLGSDTSHCKVFMDTEDVGRTLDLSCLASYDELYMRLATMFGIERSEMLSHVLYRDATGALKQTGEEPFSEFTKTAKRLTILSDSSSKDSRRVWITGTRNAEHGLDATSNKTGPMSIFA* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0327 694 Pfam Auxin response factor 268 351 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vra4g0327 694 SMART B3_2 112 214 IPR003340 GO:0003677
Vra4g0327 694 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677
Vra4g0327 694 Gene3D - 110 214 IPR015300 -
Vra4g0327 694 MobiDBLite consensus disorder prediction 91 110 - -
Vra4g0327 694 Gene3D - 306 378 - -
Vra4g0327 694 CDD B3_DNA 111 212 IPR003340 GO:0003677
Vra4g0327 694 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Vra4g0327 694 ProSiteProfiles PB1 domain profile. 581 661 IPR000270 GO:0005515
Vra4g0327 694 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 670 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vra4g0327 694 MobiDBLite consensus disorder prediction 533 567 - -
Vra4g0327 694 SUPERFAMILY DNA-binding pseudobarrel domain 107 213 IPR015300 -
Vra4g0327 694 Gene3D - 578 665 - -
Vra4g0327 694 PANTHER AUXIN RESPONSE FACTOR 2 670 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0327 Vra-Chr4 5991480 5994663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0327 4 663 B3 DNA Binding Superfamily AT4G30080 60.147 0.0 769
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vra4g0327 B3 4.4e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0327 - - gmx:100778135 1254.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0327 4 5991480 5994663 Vra4g0327 4 5991480 5994663 ECH
Vra4g0327 4 5991480 5994663 Vra2g0730 2 6268287 6271161 ECH
Vra4g0327 4 5991480 5994663 Vra2g0730 2 6268287 6271161 PCT