Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0321 ATGGCCAAAGACGTTGAGCAGGTCACGGAGCAACCCGAATACTCCGCCAAGGACTACCACGACCCGCCTCCGGCGCCGTTGTTCGACCCCGATGAGCTCACCAAGTGGTCCTTGTACAGAGCCGCCATAGCCGAATTCATAGCCACCCTCCTCTTCCTTTACATCACCGTCTTGACCATTATCGGCTACAAGAGACAGACCGACCCCAATATCTCCGGTACCAGCGAGTGCGACGGGGTAGGCATTTTGGGCATCGCTTGGGCCTTCGGTGGCATGATCTTCGTCCTCGTTTACTGCACCGCCGGCATCTCCGGGGGCCACATCAACCCTGCAGTGACGTTTGGGTTGTTCCTGGGGCGCAAGGTGTCGTTGGTGAGGGCGTTGCTGTACATAGTGGCACAGGTCGCCGGCGCAATCAGCGGTGCTGGGTTGGCGAAGGGGTTCCAAAAATCTTACTACAACAGGTACGGTGGAGGGGCTAACTCTGTGAGCGATGGCTACAACAAAGGCACTGCCGTGGGTGCCGAAATCATCGGTACCTTTGTTCTTGTCTACACCGTTTTCTCCGCCACCGATCCTAAGAGAAACGCTAGGGACTCTCATGTTCCTGTACTGGCACCCCTTCCCATTGGGTTTGCCGTCTTCATGGTTCACTTGGCTACAATCCCTATCACTGGAACCGGCATTAACCCTGCAAGGAGTTTCGGACCAGCTGTGATCTTCAACAATGACAAAGTCTGGGACGACCAATGGATTTACTGGGTTGGACCGTTTGCTGGAGCTGCGGCGGCTGCATTCTACCACCAATACATTCTGAGAGCTGCAGCTATAAAGGCCCTTGGATCCTTCAGGAGCAACGCATAA 864 0.5532 MAKDVEQVTEQPEYSAKDYHDPPPAPLFDPDELTKWSLYRAAIAEFIATLLFLYITVLTIIGYKRQTDPNISGTSECDGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLGRKVSLVRALLYIVAQVAGAISGAGLAKGFQKSYYNRYGGGANSVSDGYNKGTAVGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGPAVIFNNDKVWDDQWIYWVGPFAGAAAAAFYHQYILRAAAIKALGSFRSNA* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0321 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 287 IPR034294 -
Vra4g0321 287 MobiDBLite consensus disorder prediction 1 25 - -
Vra4g0321 287 Pfam Major intrinsic protein 32 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra4g0321 287 PANTHER AQUAPORIN PIP2-7 1 287 - -
Vra4g0321 287 TIGRFAM MIP: MIP family channel proteins 44 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra4g0321 287 Gene3D Glycerol uptake facilitator protein. 25 287 IPR023271 -
Vra4g0321 287 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra4g0321 287 PRINTS Major intrinsic protein family signature 89 113 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra4g0321 287 PRINTS Major intrinsic protein family signature 126 145 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra4g0321 287 PRINTS Major intrinsic protein family signature 175 193 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra4g0321 287 PRINTS Major intrinsic protein family signature 211 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra4g0321 287 PRINTS Major intrinsic protein family signature 251 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra4g0321 287 MobiDBLite consensus disorder prediction 1 17 - -
Vra4g0321 287 SUPERFAMILY Aquaporin-like 32 273 IPR023271 -
Vra4g0321 287 CDD MIP 40 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra4g0321 287 ProSitePatterns MIP family signature. 107 115 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0321 Vra-Chr4 5896232 5897778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0321 1 285 Major Intrinsic Protein MIP AT5G60660 79.649 5.30e-166 460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0321 K09872 - gmx:732604 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0321 4 5896232 5897778 Vra4g0321 4 5896232 5897778 ECH
Vra4g0321 4 5896232 5897778 Vra2g0722 2 6180357 6182031 ECH
Vra3g0413 3 4752001 4754296 Vra4g0321 4 5896232 5897778 ECH
Vra4g0321 4 5896232 5897778 Vra2g0722 2 6180357 6182031 PCT