Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0319 ATGTTTACAATGCGATTGCTATGGGGGTTAAGGCTGCCTCTACTCATAATACTGATTCATCTTTTATTTCCCAACAGACCAACCTACAAATTCCACGCTGAGGCTTTGATCACTTTCAAGGGTTCGCTTGGAGGTCCACAGCAATTAGGATGCAGCATTGTGAAATATCCATGTCAAATGCAATGGCCTTGTCTTGACTGCTATAAACTAAAAGATCCAGAAACTCAAGATAGAAAACCAGGTGGAAGAAGGAGTTCTGCCATAATTGGTAGCGTTATTGCTGCCATAGTTGTCGTTGTAATCCTGGTGACTGTCTATATCTGCTTAATGCGTGTTAAAAAATCTCTGAGGCAAACATCTGAGGTTGCTTCTTCTATGCCATCTCCCACCGTTGAGATGGGAAGAGTCAACACACAGCATGTCACTGCTTTCTCTCCACAAAACACAAGGCAGTTAACAATTTTGGAACTGGAACAAGCAACACAAAATTTCAGTCGTAATAATATCATTGTTGAAGGTGGATTTGGTGTTGTATACAAGGGCTTGCTTCAAGATGGTTCTATTGTGGCTATAAAAAGGCGTCTATTTGCTCTGACAAAAGATTTCGTCCTAAATGTGAAACAGATAGCTCATATTCACCACATCCACCTGGTCAAGCTCATAGGCTATTATGAAGATAGCCATCAACAATTACTTGTATATGAATATCTCCCTAACGGCAATGTAGGGAGTCACCTATATGATAGTGAAGGTTTACCTGTTGGAAGGTTAAACTTGTGGCGAAGGTTGTCTATTGCTTTAGGCGCATCCAAAGGAGTGGAACATCTTCACAGTTTGGTTCCTCCTTTGGTTCACACAAACTTTAGAACTAGCAATGTTCTGTTAGATGAAAATTTTACTGCCAAGGTTTCTGACTATGGATTCTGCAAACTGCAAACACAAGTTGATCAGGCAGGCTCGTCTTCAAATGTAGACTGTTTTCTTGACCCAGAGTTGAGCTTTCCACAAAACTTTTCGGAGAAGAGTGATGTATACAGTTTCGGGGTGTTCTTACTAGAGTTGATATGTGGCTGTGATGCACATAACAAAAACATGTTACACCCAGATGAAAATATAGCATTTCAGGTGAAAAATAGTGTTGACTTGGACAGAGTTGTTGACATGACACTGGGATACAAAGAAAAACATGGTGCTAGACGAATTTTGATGTTGGCATTGCAGTGTGTGGATGCTACTTGTAGAAGACCATCAATGGCGCAAATTGTGCTAGAGCTGGAGCGGATTCAAAGAGAAATTGCTCCCATGTATTCTCAATTCAACGATGAGATTGGTGCCGTGACTCTTGGGAGTGAACTTTTTCAATGA 1365 0.4081 MFTMRLLWGLRLPLLIILIHLLFPNRPTYKFHAEALITFKGSLGGPQQLGCSIVKYPCQMQWPCLDCYKLKDPETQDRKPGGRRSSAIIGSVIAAIVVVVILVTVYICLMRVKKSLRQTSEVASSMPSPTVEMGRVNTQHVTAFSPQNTRQLTILELEQATQNFSRNNIIVEGGFGVVYKGLLQDGSIVAIKRRLFALTKDFVLNVKQIAHIHHIHLVKLIGYYEDSHQQLLVYEYLPNGNVGSHLYDSEGLPVGRLNLWRRLSIALGASKGVEHLHSLVPPLVHTNFRTSNVLLDENFTAKVSDYGFCKLQTQVDQAGSSSNVDCFLDPELSFPQNFSEKSDVYSFGVFLLELICGCDAHNKNMLHPDENIAFQVKNSVDLDRVVDMTLGYKEKHGARRILMLALQCVDATCRRPSMAQIVLELERIQREIAPMYSQFNDEIGAVTLGSELFQ* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0319 454 Gene3D Transferase(Phosphotransferase) domain 1 237 446 - -
Vra4g0319 454 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 74 452 - -
Vra4g0319 454 PANTHER PROTEIN KINASE APK1A, CHLOROPLASTIC-LIKE 74 452 - -
Vra4g0319 454 Gene3D Phosphorylase Kinase; domain 1 126 236 - -
Vra4g0319 454 Pfam Protein tyrosine and serine/threonine kinase 168 424 IPR001245 GO:0004672|GO:0006468
Vra4g0319 454 SUPERFAMILY Protein kinase-like (PK-like) 143 433 IPR011009 -
Vra4g0319 454 ProSiteProfiles Protein kinase domain profile. 164 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0319 Vra-Chr4 5883594 5888550 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0319 85 428 Receptor kinase-like Gene Family AT1G79620 33.884 1.15e-52 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Vra4g0319 PK_Tyr_Ser-Thr 2.4e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0319 - - gmx:100815066 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0319 4 5883594 5888550 Vra4g0319 4 5883594 5888550 ECH