Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0315 ATGAGTGCTCAACAAAAAGAAACGGAAAATCATGACACGCTTTCGTCCAATCCAACGGTGGGTGATACAATGGGGGTAGCCGGTGAAACCTCGCATGGAAACAATGACTGGAAGCCAGAGAAAATTCAGTTGGAAATACCGACCACAACATCGGAAGACTGTTGTCGGGATTTTGTTGGAATAAGGATGCCACTGACGCCAAGTCCAACTCCTAGTCAGAAGAAAGTGAATTTTCTTGTGACTTCTCGCTCTGTGGATGCTCCCAGACCTTCTTCTTCTTCTTCTTCTTCGGCTTCCAGAGGCAAATCATCCATGAGAAACATCTTGCCGAGGTTTGGCTTCAAGAATCGTCAGTCGCTTGATGTCGAAAAGGCTGTTACCGCAGCTTCAGAAGCTTCTTTTTCTGGCCATCAAGAAAAGTCCTCCATCGCTAGATCAGTGTCTCTCACCAAGATATTCACTCCTAAGATTAATAGAACGTCTTCGTTACCGGTAGAAGAAATTGGGCGTGCAGACGTAGAATCTGCTCTGGCTGGAACTCTTGCTGCTTCTCCATACCAGGGAAGAGAGACGCAGGGGATGATAGCTCGTTCTCGTTCAGTGCCTGTCAATAGCAAAGAAAAAGGCATAAGGAGAATGGATTCAGTTTTCCGCATCATTCCTTCCACTCCTCGCGTACATGAAGTCAATCAATCAACAAAGGATTCTGACAATGGAGGTGGTGAAGATATTGGTCAAGAGGAAGCGGTGTGCAGAATTTGTCTGGTTGATCTATGTGAAGGAGGTGAGACATTAAAGATGGAATGCAGCTGCAAAGGTGAACTGGCTCTGGCTCACCAAGAATGTGCTGTTAAATGGTTTAGTATCAAGGGTAACAAGACCTGTGATGTGTGCAAGGAGGAAGTTCGGAACCTCCCTGTCACTCTCTTACGGATCCGAAGTGTCCAAACCCAGAATACTGGAGTAAGGTCCGAGCAGGGAGATGATTTCAGGGTTTGGCAGGAACTCCCAGTGCTTGTTATTGTCAGCATGCTTGCCTACTTTTGTTTCCTTGAGCAGCTGTTGGTTGGAAAAATGGGAACCAGGGCAATTTTCGTCTCTCTTCCATTTTCATGTGTACTAGGCCTACTCTCCTCCGTGACATCAACGACCATGGTGAAGAGCAAGTTCATCTGGTTATATGCATCTGTCCAATTTCTTTCGGTGGTCCTATTCGCTCATATATTTTACCCCTTGGTTGGTAAGCATGCGGTTTTGTCGATCCTTCTTGCTACATTTGCCGGGTTTGGTGTTGTGATGAGTGGAAGTTCAATTGTTTTGGAGATTTCTAGATGGAGAAGAAGATGGCAAACTTTATCACAGCAGCAGCGTGGTTCTTCAGCAATGACACAAGAAGGGCTATCAAATAACTAA 1413 0.4565 MSAQQKETENHDTLSSNPTVGDTMGVAGETSHGNNDWKPEKIQLEIPTTTSEDCCRDFVGIRMPLTPSPTPSQKKVNFLVTSRSVDAPRPSSSSSSSASRGKSSMRNILPRFGFKNRQSLDVEKAVTAASEASFSGHQEKSSIARSVSLTKIFTPKINRTSSLPVEEIGRADVESALAGTLAASPYQGRETQGMIARSRSVPVNSKEKGIRRMDSVFRIIPSTPRVHEVNQSTKDSDNGGGEDIGQEEAVCRICLVDLCEGGETLKMECSCKGELALAHQECAVKWFSIKGNKTCDVCKEEVRNLPVTLLRIRSVQTQNTGVRSEQGDDFRVWQELPVLVIVSMLAYFCFLEQLLVGKMGTRAIFVSLPFSCVLGLLSSVTSTTMVKSKFIWLYASVQFLSVVLFAHIFYPLVGKHAVLSILLATFAGFGVVMSGSSIVLEISRWRRRWQTLSQQQRGSSAMTQEGLSNN* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0315 470 SMART ringv_2 250 299 IPR011016 GO:0008270
Vra4g0315 470 MobiDBLite consensus disorder prediction 1 30 - -
Vra4g0315 470 ProSiteProfiles Zinc finger RING-CH-type profile. 243 305 IPR011016 GO:0008270
Vra4g0315 470 MobiDBLite consensus disorder prediction 82 104 - -
Vra4g0315 470 PANTHER OS02G0165000 PROTEIN 17 463 - -
Vra4g0315 470 MobiDBLite consensus disorder prediction 1 49 - -
Vra4g0315 470 CDD RING_CH-C4HC3_MARCH 251 299 - -
Vra4g0315 470 SUPERFAMILY RING/U-box 247 302 - -
Vra4g0315 470 MobiDBLite consensus disorder prediction 82 107 - -
Vra4g0315 470 Pfam RING-variant domain 251 298 IPR011016 GO:0008270
Vra4g0315 470 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 306 IPR013083 -
Vra4g0315 470 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 17 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0315 Vra-Chr4 5856109 5860152 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0315 248 305 C3H Transcription Factor Family AT2G37950 47.458 4.19e-13 66.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0315 4 5856109 5860152 Vra4g0315 4 5856109 5860152 ECH
Vra4g0315 4 5856109 5860152 Vra2g0715 2 6136580 6141031 PCT