Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0312 ATGGGAGATTATAAGAGATTTTCATTTTCCAAAATGATTGGCTGCTGTGGTTGCTTCGGATTTGTGAAAAAACCTAGACGGCGTCGGGCGAAGCGTAGCATCAACAATTTTCTCTCCCATGGCCTATTATATGATGGAGAAACTGAAGGTGATGAGTCGTTTAGTGGTGATGTTACTAGTAACGCCACCAGTGGAGATGATAACGAGGCGCATGCTGTACGGAATCGTTCGGAGGATATTTTGAACTTTAGAGCTGAGAATGGCATGGTTTGTAGGCCACATCCTGTCAAGGAGACTTTTGAACTTGTTCGCTCAGAGGATGAATATGGGAACAAGATGATAAATGAATACATCCGAGAGTACAAAATTGGTTCTGGAAGCTATGCCAAAGTGGCTCTTTATCGAAGTTGCTTTGACGGAAATCACTATGCAATTAAGTCCTTTCACAAGTCTCATTTACAAAAGCTTCGCGTTGCACCCTTTGAGACTGCCATGACTGATGTTCTAAGGGAGGTACTGATTATGAAAATGGTGGAACATCCTAATATAGTCAATCTCATTGAAGTTATTGATGACCCAGAGTCAGATGACTTCTACATGGTACTTGAATATGTGGAAGGCAAATGGGTCTGTGAGGGTACAGGTCGTCCTTGTGCATTAGGTGAAGAGACCGCTAGGAAATACTTGCGTGATATAGTCTCGGGATTAACATATCTCCATGCTCACAATATAGTGCATGGGGATATAAAACCTGATAATCTGTTGATCACTCGTCATGGCAAAGTAAAGATAGTGGATTTCAGTGTCAGCCAGGCTTTTGAGGATGGCAATGATGAACTTCGTCGATCACCTGGCACCCCTGTTTTCACTGCACCAGAATGTTGTTTAGGTCTTACTTATCATGGTAAAGCTTCTGACACGTGGGCCGTAGGAGTTACTTTGTACTGTATGATATTGGGTGAATACCCATTTCTTGGAGATACACTTCAAGATACATATGACAAAATAGTCAATGATCCTTTAGTTCTGCCAGATGACATTAATCCCCAGTTAAAGAACTTAATAGAAGGATTACTGTGCAAAGACCCAGAAAAAAGGATGACATTGGGCGATGTTGCGGAGCATGTCTGGGTTATTGGAAATGATGGGCCGCTTCCTGGGTACTTATGTTGGTGCAAACGCAAGAGCCTGTTGGCTGCTGATTTTGATGCGAGCAATATACCACCATTGCTTGATCCACATTGA 1245 0.4249 MGDYKRFSFSKMIGCCGCFGFVKKPRRRRAKRSINNFLSHGLLYDGETEGDESFSGDVTSNATSGDDNEAHAVRNRSEDILNFRAENGMVCRPHPVKETFELVRSEDEYGNKMINEYIREYKIGSGSYAKVALYRSCFDGNHYAIKSFHKSHLQKLRVAPFETAMTDVLREVLIMKMVEHPNIVNLIEVIDDPESDDFYMVLEYVEGKWVCEGTGRPCALGEETARKYLRDIVSGLTYLHAHNIVHGDIKPDNLLITRHGKVKIVDFSVSQAFEDGNDELRRSPGTPVFTAPECCLGLTYHGKASDTWAVGVTLYCMILGEYPFLGDTLQDTYDKIVNDPLVLPDDINPQLKNLIEGLLCKDPEKRMTLGDVAEHVWVIGNDGPLPGYLCWCKRKSLLAADFDASNIPPLLDPH* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0312 414 ProSiteProfiles Protein kinase domain profile. 117 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0312 414 ProSitePatterns Protein kinases ATP-binding region signature. 123 146 IPR017441 GO:0005524
Vra4g0312 414 Pfam Protein kinase domain 119 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0312 414 SMART serkin_6 117 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0312 414 Gene3D Transferase(Phosphotransferase) domain 1 216 384 - -
Vra4g0312 414 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 6 406 - -
Vra4g0312 414 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 6 406 - -
Vra4g0312 414 CDD STKc_LKB1_CaMKK 123 378 - -
Vra4g0312 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 244 256 IPR008271 GO:0004672|GO:0006468
Vra4g0312 414 SUPERFAMILY Protein kinase-like (PK-like) 113 386 IPR011009 -
Vra4g0312 414 Gene3D Phosphorylase Kinase; domain 1 111 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0312 Vra-Chr4 5800151 5805978 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0312 123 385 CBL-interacting serine-threonine protein kinases AT5G35410 34.221 8.87e-44 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Vra4g0312 Pkinase 1.4e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0312 K00908 - gmx:100776013 761.911
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0312 4 5800151 5805978 Vra4g0312 4 5800151 5805978 ECH