Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0308 ATGATGTCTGGTGAAGCAATAACTGTCCCTTCCAACCTCAGAGATTCCTCGGTTCAAGTCCACGACCCAATCTCAAACCCTAATCCTACTAACCCTAATCCAAACTCTTCGGTTAAGAGAAAAAGAAGCCTACCCGGAACACCAGTAAATCGATGGACCAATATAGCAGATCCGAATGCTGAAGTGATTGCTCTGTCGCCAAAGTCGCTGATGGCCACGAACCGGTTCATATGCGAAGTGTGCAACAAGGGTTTTCAGAGAGACCAGAACCTGCAGCTGCATCGGCGAGGGCACAATCTGCCGTGGAAGCTGCGGCAAAGATCAAAGGAAGAGGTGAGGAAGAAGGTGTACGTGTGTCCGGAGAAGAGTTGCGTGCACCATGACCCTTGCAGAGCCTTGGGAGACCTCACTGGGATAAAGAAACACTTCAGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGCGAAAAGTGCTCCAAGAAATACGCTGTTCAATCTGACTGGAAAGCCCATAACAAGATTTGTGGGACTAGACAGTACAAATGTGACTGTGGCACAATATTCTCCAGGAAGGACAGCTTTGTAACGCATAGAGCCTTTTGTGACGCTATGGTGGAACAAAGTGGGAGACTTCCGGCAATTTTATCAAACCTCGGAAACGATATTTTGATGAACGCGCAAGGCCCGAGACTAATGCCTCAGGGTCTACAACTACACGGGTTTCATTCAGAGTTTGGTGGGCCAGGTTCGGAATCATACATGGGAAATTTTGCTGATGCCGAGCATGTTGAACATAAGCTAAGGTTGCCGATATGGCTAGACCAGACAAATCTTCAACTTAACCATCCTCTCGGCGTTGTTCCAGGCAATTCAAGTGTATTCTCAACTGGAACAACGTTGCCGGAAACAAACAACATGTTCGGGACATCGTCGTCACAGGCACAGTGGACAAATTACCGATACCCAGAAGCATCTTTTAGAAGTGCCAGTGTTTCTGTGCCTCATGGACTGAAGCTAGAGCAAGAAGAAAACAAAGGGGAGTTGTCGCATAGCGTGAGCTCTTTGTACCCAAGTCACATGGAATCTATTAGGATGGGTGGTAATTCACCTTTCGACAACTCTAACTTTGGCCTGTTAGACCCGAACATGTCAAGCACGTCAACCAACAATGTGGTCGAAATTCAGAAGATATTTAAGGAAGGAAACGAGGGTGAAAACTTCAGCCTGATGGTGAGTTCCCAGGCAAGAAGCAACATGGAAAGTGGGTTTTCCTTGAGTTGCAGGAAGAGTTTGGAGCATATGGTGATGCCTCGCATCGAAGAGTGGGAAAGTGGAGAAGCAGAAATAATGGAGAAGCAGCAAGTACATTCAAGTTCAAACACTGAAACGAAAGATTTCATGGGTGTGGGAGATGGGTCAGTGATGAACCTGCAAAGGCAGTTCCTTGGACAGTACTGA 1455 0.4708 MMSGEAITVPSNLRDSSVQVHDPISNPNPTNPNPNSSVKRKRSLPGTPVNRWTNIADPNAEVIALSPKSLMATNRFICEVCNKGFQRDQNLQLHRRGHNLPWKLRQRSKEEVRKKVYVCPEKSCVHHDPCRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHNKICGTRQYKCDCGTIFSRKDSFVTHRAFCDAMVEQSGRLPAILSNLGNDILMNAQGPRLMPQGLQLHGFHSEFGGPGSESYMGNFADAEHVEHKLRLPIWLDQTNLQLNHPLGVVPGNSSVFSTGTTLPETNNMFGTSSSQAQWTNYRYPEASFRSASVSVPHGLKLEQEENKGELSHSVSSLYPSHMESIRMGGNSPFDNSNFGLLDPNMSSTSTNNVVEIQKIFKEGNEGENFSLMVSSQARSNMESGFSLSCRKSLEHMVMPRIEEWESGEAEIMEKQQVHSSSNTETKDFMGVGDGSVMNLQRQFLGQY* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0308 484 SUPERFAMILY beta-beta-alpha zinc fingers 75 172 IPR036236 -
Vra4g0308 484 SMART c2h2final6 76 98 IPR013087 -
Vra4g0308 484 SMART c2h2final6 152 172 IPR013087 -
Vra4g0308 484 SMART c2h2final6 117 147 IPR013087 -
Vra4g0308 484 MobiDBLite consensus disorder prediction 1 52 - -
Vra4g0308 484 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Vra4g0308 484 PANTHER PROTEIN INDETERMINATE-DOMAIN 13-RELATED 25 473 - -
Vra4g0308 484 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 473 - -
Vra4g0308 484 Gene3D Classic Zinc Finger 130 208 - -
Vra4g0308 484 Gene3D Classic Zinc Finger 56 127 - -
Vra4g0308 484 Pfam Zinc-finger double-stranded RNA-binding 76 98 IPR022755 -
Vra4g0308 484 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 98 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0308 Vra-Chr4 5774785 5777496 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0308 9 209 IDZ Gene Family AT3G50700 71.569 2.39e-107 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra4g0308 zf-C2H2_jaz 8.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0308 K25870 - gmx:100811687 725.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0308 4 5774785 5777496 Vra4g0308 4 5774785 5777496 ECH
Vra4g0308 4 5774785 5777496 Vra2g0696 2 5933032 5936143 PCT