Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0307 ATGGAGGGAGATCAAGTGGGCTCTGGTTACTCTTTTCCACCTGGCTTCAGATTCCACCCTTCTGATGAAGAACTCATAGTTCATTACTTGCGAAACAAAATCTGTTCACGTCCACTTCCAGCATCTATTATAGCTGAGATAGATCTCTACAAGTATAACCCGTGGGAGCTACCCAATAAGTCTTTGTTTGGAGAAGAAGAGTGGTATTTCTTTAGCCCAAGGGACCGAAAGTACCCAAATGGATTGAGACCAAACAGGGCAGCAGCCTCAGGATACTGGAAGGCAACAGGAACTGACAAGCCAATTCTTTCTTCCAGTGGATCGAAGCGCATAGGAGTGAAGAAAGCTCTGGTGTTTTATTCAGGTCGACCTCCTAAGGGATCTAAGACGGATTGGATCATGAATGAGTATAGATTGATTGATACAATTACCAAATCCCCCAGGCTAAAAGGCTCCATGCGGTTGGATGACTGGGTACTATGCCGGGTTCGACATAAAGGCTACTCTTCGAAGATATCAGGTGAAAATCAAGAGAATCCTAGTGAACTAAACCTGTCTGCAAAACTACCGAGGAGTGAAGGATATCCAACAAACATGAACTGTCGGGCTGACATGATCACTGATTATCAATACAAAGACTATCAGATCATAGCCTCTATTCTTGTTGGTGCACCTGTATCTCCCACTGAAAACATGCCAAATATGAGCTTTAAGGGCTGCAAAGGCACCAATCTAGTTTCAGTTTTTGAAGATGGTTTAACTAAAGTGAATTCTCAAATGACATTTCCTTCTTTGGACAGTTACTTCAACCCACTGACTAGAAAATCCAATGAAGATGAACAGTATGGAAATCTCATCTCTTTTAACAGGAAGTTCAACGCTGAGGACAAAATGGACGAATCACCTAGCAGGGTGTTGGCCAGTAGAGAATTGAACTGCTATAACCAAAACCAGTCTGAAGATGACATTTTCAGCGGGAACCCACCAGACACTGGCATCGATTTTCAAGATCTTAACGATTTAGTCTTTACAGGAAGTGACAGCCCTCAGATAGCGCAAGGATGCAATACCATGTTACAACCGGATACCAGCACAACAAGGGAAATGATTCAAGATCAAGTCACCTCAGAGCACTGA 1137 0.431 MEGDQVGSGYSFPPGFRFHPSDEELIVHYLRNKICSRPLPASIIAEIDLYKYNPWELPNKSLFGEEEWYFFSPRDRKYPNGLRPNRAAASGYWKATGTDKPILSSSGSKRIGVKKALVFYSGRPPKGSKTDWIMNEYRLIDTITKSPRLKGSMRLDDWVLCRVRHKGYSSKISGENQENPSELNLSAKLPRSEGYPTNMNCRADMITDYQYKDYQIIASILVGAPVSPTENMPNMSFKGCKGTNLVSVFEDGLTKVNSQMTFPSLDSYFNPLTRKSNEDEQYGNLISFNRKFNAEDKMDESPSRVLASRELNCYNQNQSEDDIFSGNPPDTGIDFQDLNDLVFTGSDSPQIAQGCNTMLQPDTSTTREMIQDQVTSEH* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0307 378 Pfam No apical meristem (NAM) protein 13 139 IPR003441 GO:0003677|GO:0006355
Vra4g0307 378 Gene3D NAC domain 21 169 IPR036093 GO:0003677|GO:0006355
Vra4g0307 378 ProSiteProfiles NAC domain profile. 12 166 IPR003441 GO:0003677|GO:0006355
Vra4g0307 378 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 318 - -
Vra4g0307 378 SUPERFAMILY NAC domain 9 166 IPR036093 GO:0003677|GO:0006355
Vra4g0307 378 PANTHER NAC TRANSCRIPTION FACTOR 56 1 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0307 Vra-Chr4 5759268 5763904 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0307 5 177 NAC Transcription Factor Family AT1G69490 66.474 1.32e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra4g0307 NAM 2.5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0307 - - vra:106759457 783.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0307 4 5759268 5763904 Vra4g0307 4 5759268 5763904 ECH