Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0306 ATGTCTGTCATCGACATTCTCTTCCGCGTCGATGCCATTTGTCACAAATATGACAAATACGACATCGACAAGCAGCGCGAGCAAAACGCCTATGGTGACGACGCCTTTGCTCGCCTCTATGCAGCTGTCGAATCCAGCATTCAGACCGCTCTCGACAAATCGGAGGCTGCTTCCACGGAGAACAACAGGGCAGTTGCTGCGGCTTTGAATGCGGAGGTTCGTCGGACCAAGGGTAGACTCATGGACGAGATTCCCAGACTGCGCAAATTGGTGCATAAGAAGGTTAAAGGTCTCACAAAAGAGGATATGGCCATTCGTCAGGATCTTGTTCTGGCATTGCCCGAGAGAATCCAAGCAATACCTGATGGTATTTCTGGTGCTTCTCTTCAAACTGCAGGATGGACTGCTGACTCATCTCAGCCATATGTCAAGTTTGACTCAGAGGGACAACTTGATACTGAATATTTCCAACAAAGTGAAGAATCCAGTCAGTTCAGACAAGAGTATGAGATGCGCAGGAAGAAACAGGATGAAGGACTTGATATCATATCGGAGGGATTGGATACCTTGAAGGAACTGGCCCATGATATGAATGAGGAATTGGATCGGCAAGTTCCACTAATGGACGAAATTGACAAAAAGGTGGATAGGACAACAGCTGAACTGAGAAACACTAACGTGAAGCTGAAGAAAACTCTCAACGAGATAAGGTCTAGTCGAAACTTCGTCATCGACATCATTCTACTCTGTGTTCTTCTTGGAATCGTTATGTATTTATACAATGCTCTGAGGTGA 795 0.4604 MSVIDILFRVDAICHKYDKYDIDKQREQNAYGDDAFARLYAAVESSIQTALDKSEAASTENNRAVAAALNAEVRRTKGRLMDEIPRLRKLVHKKVKGLTKEDMAIRQDLVLALPERIQAIPDGISGASLQTAGWTADSSQPYVKFDSEGQLDTEYFQQSEESSQFRQEYEMRRKKQDEGLDIISEGLDTLKELAHDMNEELDRQVPLMDEIDKKVDRTTAELRNTNVKLKKTLNEIRSSRNFVIDIILLCVLLGIVMYLYNALR* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0306 264 SMART tSNARE_6 165 232 IPR000727 -
Vra4g0306 264 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
Vra4g0306 264 PANTHER SYNTAXIN-72 1 261 - -
Vra4g0306 264 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vra4g0306 264 Gene3D - 169 231 - -
Vra4g0306 264 PANTHER SYNTAXIN 1 261 IPR045242 -
Vra4g0306 264 SUPERFAMILY SNARE fusion complex 163 231 - -
Vra4g0306 264 CDD SNARE_Qc 173 231 - -
Vra4g0306 264 Coils Coil 208 235 - -
Vra4g0306 264 Pfam SNARE domain 207 256 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0306 Vra-Chr4 5756416 5759418 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0306 1 264 SNARE and Associated Proteins AT3G09740 66.165 4.33e-134 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0306 K08506 - gmx:100777251 447.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0306 4 5756416 5759418 Vra4g0306 4 5756416 5759418 ECH