Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0302 ATGGAAATTGATCTGAACTATGCAGTGACTGAGCCTGAGAAGACCGCGTCTTGCAATGGGGACTGTGACAAAGCTGCTGCTTGCGTTTGCGTTTCCTCTCTGTCCTCTCCTACTTGTTCATCTTCTGGTTCCTCCTCCGCACGTGTGTCCTCCTCTTATCTTGAGCTCTGGCACGCTTGTGCTGGCCCCCTCACTTCCCTCCCAAAGAAAGGGAATGTGGTGGTGTATTTTCCACAAGGGCACTTAGAACAAGCTTCATCTTTCTCTCTCTTTTCACCAATGGACATGCCAACCTATGATCTTCAGCCACAGATCTTCTGTAGAGTTGTCAATATTCAGTTACTTGCCAATAAGGAGAATGATGAGGTTTATACACAGGTTACTTTGCTTCCCCAGGCTGAGTTGGCAGGGATGTATTTGGAGGGAAAAGAGCTTGAGGAATTGGGAGCTGATGAAGAGGGAAATGAAACAACACCTACAAAATCAACTCCTCACATGTTCTGCAAAACACTCACAGCCTCAGACACCAGCACTCATGGGGGTTTTTCTGTCCCTCGCAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGCAGCAAAGACCCTCTCAGGAGCTTGTTGCCAAGGACCTGCATAATGTGGAGTGGAAATTTCGACATATTTACAGAGGTCAGCCAAGGAGGCATCTGCTCACTACTGGCTGGAGTATTTTTGTTAGCCAAAAGAATCTTGTTTCTGGAGATGCAGTTCTCTTTCTGAGGGGTGAAAATGGAGAATTGAGATTGGGAATCCGAAGAGCTGCTCGACCAAGAAATGGTCTTCCTGAATCAATTGTTGGTAGCCAGAATTATTATCCCAATTTCCTTTCTTCTGTGGCAAATGCTATATCCTCCAAAAGCATGTTTCATGTTTTCTACAGTCCAAGAGCAAGTCATGCGGATTTTGTTGTGCCCTACCAAAAATATGTCAAAAGCATAAAGAATCCAGTGACCATTGGGACAAGATTCAAAATGAGATTTGAAATGGATGAATCTCCCGAGAGAAGGTGTACTAGTGGTATAGTGACTGGAATGAGTGATTTGGATCCCTATAAATGGCCTAAGTCAAGATGGAGGTGCTTGATGGTCAGATGGGATGAAGATATTGAGATTAATCATCAAGATAGAGTATCTCCTTGGGAGATCGATCCTTCTGCATCTCTCCCTCCGTTGAGCATTCAATCCTCCAGAAGGCTGAAGAAACTTAGGCCAGGTCTGCAGGGTGCTTCACCCAGTCACCTCATCACAGGAGGCAGTGGGTTTATGGACTCTGAGGAGTCTGTAAGATCATCCAAGGTCTTGCAAGGTCAAGAAAAGTCAGGTTTTATGTCACTGTATTATGGATGTGACACAGTAACTAAGCAGCCAGAATTTGAGATCAGATCTCCAAGTCATCCAAATTTTGCATCATCAACAGGAGTGAGAAAGATTGCTGCTGGTGAGTTTATGAGGGTCCACCCTCCTAGTTATGCAGGCTTCACGGAACCTAACAGGTTTCCAAGGGTCTTGCAAAGTCAAGAAATATGTCAGTTGAGATCTCTGACAGGAAAGGTTGATTTGAACTTTGGTGCCTGGGGCAAACCCAGTGTCAGTTTCACAAATTACAACCTGCAACAGGCAACCAAACCCAACTTCCACTCTTTAGGGCCCGAAGTTATTCAAACTGCATATTTTCCTTATGGCGATATTCACAAAGCTGGCCAAGGTAGCGGCACCAGCATGTTGTGCTCTAAACCTACCAATTTCCAGCGAGAGAATGTTCCATTTAACTCTCCTTCCTCTCAGTCAGGGATCATGAGAAATGAAGTTGGACGAGCAGAAGTCACAATCCAAAATGAGCAGAAGCTGCAGGACAATATTTCTGGTGCTGCTTCTTTAGGGACAAACGTCCGGATTCCAAGTGATGAGAATTTCAACGGGAAGGTAAATGCTTGTAAACTGTTTGGATTTCCCTTGTCCGGGGAAGCCACCACCCAAAATTTACAGAACTCAGCTAAAAGAAGTTGCACAAAGGTTCACAAGCAAGGTAGCCTAGTTGGAAGAGCCATTGATCTCTCAAGATTGAACAGCTACAATGACCTGCTGGTTGAACTAGAGAGACTATTCAGCATGGAAGGCCTTCTAAGAGATCCTAACAAGGGATGGAGAATCCTATATACTGACAGTGAAAATGACATCATGGTTGTGGGAGATGACCCGTGGCATGAGTTCTGCGAGGTGGTCTCGAAGATTCATATCCATACACAAGAAGAAGTTGAGAAGATGACAATTGGGATGATGAATGATGATACCCAGAGTTGTTTGGAACAGGCACCAGTGATGATAGAGGCTTCAAAGTCTTCTTCTGTGGGTCAGCCAGATTCTTCTCCGACAGTGGTTAGAATCTAG 2430 0.4486 MEIDLNYAVTEPEKTASCNGDCDKAAACVCVSSLSSPTCSSSGSSSARVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQASSFSLFSPMDMPTYDLQPQIFCRVVNIQLLANKENDEVYTQVTLLPQAELAGMYLEGKELEELGADEEGNETTPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHNVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAARPRNGLPESIVGSQNYYPNFLSSVANAISSKSMFHVFYSPRASHADFVVPYQKYVKSIKNPVTIGTRFKMRFEMDESPERRCTSGIVTGMSDLDPYKWPKSRWRCLMVRWDEDIEINHQDRVSPWEIDPSASLPPLSIQSSRRLKKLRPGLQGASPSHLITGGSGFMDSEESVRSSKVLQGQEKSGFMSLYYGCDTVTKQPEFEIRSPSHPNFASSTGVRKIAAGEFMRVHPPSYAGFTEPNRFPRVLQSQEICQLRSLTGKVDLNFGAWGKPSVSFTNYNLQQATKPNFHSLGPEVIQTAYFPYGDIHKAGQGSGTSMLCSKPTNFQRENVPFNSPSSQSGIMRNEVGRAEVTIQNEQKLQDNISGAASLGTNVRIPSDENFNGKVNACKLFGFPLSGEATTQNLQNSAKRSCTKVHKQGSLVGRAIDLSRLNSYNDLLVELERLFSMEGLLRDPNKGWRILYTDSENDIMVVGDDPWHEFCEVVSKIHIHTQEEVEKMTIGMMNDDTQSCLEQAPVMIEASKSSSVGQPDSSPTVVRI* 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0302 809 ProSiteProfiles B3 DNA-binding domain profile. 167 269 IPR003340 GO:0003677
Vra4g0302 809 SUPERFAMILY DNA-binding pseudobarrel domain 158 279 IPR015300 -
Vra4g0302 809 Gene3D - 677 770 - -
Vra4g0302 809 Gene3D - 331 403 - -
Vra4g0302 809 Pfam Auxin response factor 293 375 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vra4g0302 809 PANTHER AUXIN RESPONSE FACTOR 33 797 - -
Vra4g0302 809 Pfam AUX/IAA family 673 765 IPR033389 -
Vra4g0302 809 Pfam B3 DNA binding domain 167 268 IPR003340 GO:0003677
Vra4g0302 809 SMART B3_2 167 269 IPR003340 GO:0003677
Vra4g0302 809 CDD B3_DNA 165 267 IPR003340 GO:0003677
Vra4g0302 809 Gene3D - 165 269 IPR015300 -
Vra4g0302 809 ProSiteProfiles PB1 domain profile. 681 763 IPR000270 GO:0005515
Vra4g0302 809 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 33 797 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vra4g0302 809 SUPERFAMILY CAD & PB1 domains 684 760 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0302 Vra-Chr4 5717627 5724068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0302 49 809 B3 DNA Binding Superfamily AT5G60450 60.598 0.0 869
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vra4g0302 AUX_IAA 3.6e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0302 - - gmx:100812909 1431.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0302 4 5717627 5724068 Vra4g0302 4 5717627 5724068 ECH
Vra4g0302 4 5717627 5724068 Vra2g0691 2 5860851 5866867 PCT