Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0301 ATGGATTTGGTAGCTAGTTGCAAGGAAAAATTGCAATACTTTCGTTTGAAAGAGCTCAAAGATGTGCTCACTCAATTGGGACTCTCAAAACAGGGAAAGAAGCAGGATCTTGTTGATAGGATATTGTCTATTCTTTCAGAGGACCAAGCTTGTTACTTTTTCCCAGTTTCTAAATTGTGGATCAAGAAGAATGCAGTTGGAAAACAACGGGTGGCCAAATTAGTGGAGGACACATATAGAAAATTGCAGGTATCCGGGGCCATTGACCTGTCATCGAAGGGACAGGGCTCTGATAGCAGTAATGTGAAAATTAAAAATGAAATGGAGGATTCCTTTCTATCAGATACTAAGATTCGCTGTCTCTGTGGAAATGTATTGGATACGGACCCATTGGTCAAGTGTGCAGATACAAGATGTCATGTGTCGCAGCACATCAACTGTGTTGTTATTCCAGAGAAACCTACGGATGGAACCCCACATGTTCCTGATAAATTCTACTGTGAAATATGTCGAGTTGATCGGGCAGACCCGTTCTGTGTTTCAGTGACACACCTTTTGTTTCCGGTGAAGTTGACAACAACCAATATTCCCACTGATGGGACCAGCCCAGTTCAGAGTGTGGAAAGAACGTTTCAACTCACTAAAGCAAACAAGGAGTTGGTATCGAAACCAGAATATGATGTTCAGGCTTGGTGTATGCTTTTGAATGACAAGGTTTCATTCAGGATGCAATGGCCACAATATACGGATTTAAAAGTCAATGGTCTTCCTGTTCGTGCAATTAACAGACCCGGTTCACAGGTGCTTGGGCCTAATGGTCGTGACTCTGGTTCAGTTATCACACCATATTCAAAGGATGGAATTAATAGGATTTCCTTGACAGTGGTGGATGCTCGAGTATTCTGTTTAGGGGTTCGAATTATTAAAAGGCTCACCATGCCAGAGATTCTAAGCATGATTCCAGAGGAGCGTAATGGTGAGAGTTTTGAAGATGCTCTTGCACGTGTTTGTTGTTGTGTTGGGGGTGGAAATGCAAATGATAATGCTGATAGTGATAGTGATTTGGAAGTGGTTTCAGATACTTTTAGCATCAATCTTCGTTGCCCAATGAGTGGTTCAAGAATGAAGATTGCAGGAAGATTCAAACCTTGTGTTCACATGGGCTGTTTCGATCTTGAAGTTTTTGTTGAATTGAATGAACGATCAAGGAAGTGGCAGTGCCCCATATGCCTTAAAAATTATGCTTTGGAGAATATCATCATTGACCCTTACTTCAATCGCATCACTACTCTGATGAAAAATTGTGGAGAAGAGATTACAGAGGTCGAGGTGAAGCCTGATGGTTTTTGGCGTGTCAAAGTTAAGAATGAAAGTGAACGTCGGGAGTTGGGAACTCTTGCTCATTGGCACCGTCCTGATGGATCCCTCTTTGTCTCTACTGATGAAATCAAGAAAATGGAAAATTTAAAGCTCAAACAGGAAGGTGTTTCAGATGGTCATATTGGTTTAAAACTTAGGAAGAATAGTAACGGTGTTTGGGAAGTCAGCAAACCTGAGAATACAAGCACCTCTTCTGGTAATAATAGATTGAATGAGGATCTTGAAAATATTGAACATGTTATTATTCCAATGAGCAGCAGTGACACTGGAAGTGGCCGGGATGAAGATGATCCAAGTGTAAATCAGGGTGGTGGTGGGCATATTGATTATTCTACTACCAATGGTATTGAGATTGATTCTGTGTTTAACAGTAAAATTGATTCAGCATATGGATATTCTGTTTATAATGCTTCTGCTCCAATTGGTGATGCAGAAGTTATTGTTATTAGTGATTCAGAAGAAGACAACGATGTATTGATGTCTCCAACTCCTATAACTGGGTACACCAATAATCAAACTAGTGCTGCAGTTGATGTTTACTCGGTGCTAGAGCCTGGAATTATTGATTCATATACGGAGGATCCCAATCCTGGTGGAAATGCAAGTTTAGGAGTTTTTAATAGTCATCCCAGTGAAGATGATTTTGGGATGTCCTCCCTCTGGCCATTGCAATCTGGAACTCCAGCAGTCCCAGGATTCCAATTATTTAGTTCTGAAGTGGAGGAGGATGTGTCAGATACATTGGTTGGTTTGCAGAGCGGTAACATCAATTGCTCATCGTCACTGAATGGTTATATGTTGGCCCCGGATACTGCTTTGGGATCTAGCACTCTTATGCCAGATTCCTCGGTGGTTCGACCTGATGATGATTTAAATGGTGGCTTGGTTGACAATCCACTGGCATTTCCCAGAGAAGATCCCTCCCTTCAGATTTTTCTCCCTACAAAACCAGCAGAATCATCCATTCAGCATGAATTGAGTGATCACGCGGACGTATCAAATGGTGTCTTCACGGAGGATTGGATCACTCTTAGTCTTGGAGGTGGTGCTAGTGGCCGTAACGGTGATGCTTCCACTGCAACTGGATTGAATTCCAGACCGCAAATTGCATCTGGAGAAGGTGCCTCAAATTCCTTGACAGATACCGACACGAGACCACTGAGGTATCTCAAATGGTTGAGAGATTCCATGCCGGAAGAGGATAGGAAGACGTTGGGATGCTTGGATGAATTATCTCACAGACTTCTTACTCGACAAATTGTGAAAGTCTTCCTTTCCCCACATTCCTTTGCCAGCATGTTGGGAATCATGTCGCTAGTAGAAGCTAAGATTGGAATGAAGAATGTCTTCTTTGACATGAAGAAGATTGCTATTGAGAACAAGAAAAAAGATGGTAGTCGTGGTACTAAAAAAGGTCCAATAGTAGAAACATATCCACCACCCTGGCTACAACAAGGAGGCAGGGGGATAAAGAGCAACAGATCGACTAACCCTTGGGAGTATGTTGTGACTTCTCGGTTTGACCATAAAGACTATGGAAGTCTTGTGGTGGACAACATAGATATGCAGAAAAACATAAGCATATCCCTATCTGAGGAAGAGGCGCATTTGGTTGCTCCTTTACTCCTTGGTATCAATGATGTTAGATCTGACAAGGCGAATGGGAAAAGATCTGATTCAGATAGCCCTTTCTCTTTTCCTCGCCAAAAACGTTCAAAACTGAAGAAAGTTGAGAAGCATTTTTGGTCCTCAGGAAATGGAAGATGA 3147 0.4204 MDLVASCKEKLQYFRLKELKDVLTQLGLSKQGKKQDLVDRILSILSEDQACYFFPVSKLWIKKNAVGKQRVAKLVEDTYRKLQVSGAIDLSSKGQGSDSSNVKIKNEMEDSFLSDTKIRCLCGNVLDTDPLVKCADTRCHVSQHINCVVIPEKPTDGTPHVPDKFYCEICRVDRADPFCVSVTHLLFPVKLTTTNIPTDGTSPVQSVERTFQLTKANKELVSKPEYDVQAWCMLLNDKVSFRMQWPQYTDLKVNGLPVRAINRPGSQVLGPNGRDSGSVITPYSKDGINRISLTVVDARVFCLGVRIIKRLTMPEILSMIPEERNGESFEDALARVCCCVGGGNANDNADSDSDLEVVSDTFSINLRCPMSGSRMKIAGRFKPCVHMGCFDLEVFVELNERSRKWQCPICLKNYALENIIIDPYFNRITTLMKNCGEEITEVEVKPDGFWRVKVKNESERRELGTLAHWHRPDGSLFVSTDEIKKMENLKLKQEGVSDGHIGLKLRKNSNGVWEVSKPENTSTSSGNNRLNEDLENIEHVIIPMSSSDTGSGRDEDDPSVNQGGGGHIDYSTTNGIEIDSVFNSKIDSAYGYSVYNASAPIGDAEVIVISDSEEDNDVLMSPTPITGYTNNQTSAAVDVYSVLEPGIIDSYTEDPNPGGNASLGVFNSHPSEDDFGMSSLWPLQSGTPAVPGFQLFSSEVEEDVSDTLVGLQSGNINCSSSLNGYMLAPDTALGSSTLMPDSSVVRPDDDLNGGLVDNPLAFPREDPSLQIFLPTKPAESSIQHELSDHADVSNGVFTEDWITLSLGGGASGRNGDASTATGLNSRPQIASGEGASNSLTDTDTRPLRYLKWLRDSMPEEDRKTLGCLDELSHRLLTRQIVKVFLSPHSFASMLGIMSLVEAKIGMKNVFFDMKKIAIENKKKDGSRGTKKGPIVETYPPPWLQQGGRGIKSNRSTNPWEYVVTSRFDHKDYGSLVVDNIDMQKNISISLSEEEAHLVAPLLLGINDVRSDKANGKRSDSDSPFSFPRQKRSKLKKVEKHFWSSGNGR* 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0301 1048 MobiDBLite consensus disorder prediction 810 842 - -
Vra4g0301 1048 MobiDBLite consensus disorder prediction 544 566 - -
Vra4g0301 1048 Pfam MIZ/SP-RING zinc finger 364 412 IPR004181 GO:0008270
Vra4g0301 1048 PANTHER E3 SUMO-PROTEIN LIGASE SIZ1 9 822 - -
Vra4g0301 1048 CDD SP-RING_Siz_plant 365 413 - -
Vra4g0301 1048 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 176 IPR013083 -
Vra4g0301 1048 Gene3D SAP domain 1 56 IPR036361 -
Vra4g0301 1048 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
Vra4g0301 1048 CDD PHD_Bye1p_SIZ1_like 119 170 - -
Vra4g0301 1048 Pfam SAP domain 14 42 IPR003034 -
Vra4g0301 1048 ProSitePatterns Zinc finger PHD-type signature. 120 170 IPR019786 -
Vra4g0301 1048 MobiDBLite consensus disorder prediction 1010 1048 - -
Vra4g0301 1048 ProSiteProfiles Zinc finger SP-RING-type profile. 351 434 IPR004181 GO:0008270
Vra4g0301 1048 MobiDBLite consensus disorder prediction 922 950 - -
Vra4g0301 1048 SUPERFAMILY SAP domain 1 51 IPR036361 -
Vra4g0301 1048 SUPERFAMILY FYVE/PHD zinc finger 114 174 IPR011011 -
Vra4g0301 1048 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 9 822 - -
Vra4g0301 1048 MobiDBLite consensus disorder prediction 1010 1028 - -
Vra4g0301 1048 SMART sap_9 11 45 IPR003034 -
Vra4g0301 1048 SMART PHD_3 119 171 IPR001965 -
Vra4g0301 1048 MobiDBLite consensus disorder prediction 812 842 - -
Vra4g0301 1048 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 343 452 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0301 Vra-Chr4 5698369 5716035 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0301 - K22403 gmx:100803144 1410.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0301 4 5698369 5716035 Vra4g0301 4 5698369 5716035 ECH
Vra4g0301 4 5698369 5716035 Vra2g0687 2 5823737 5836351 PCT