Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0299 ATGGAGAGTGACGCAAACACCCTCACTTCCTCTCCGACATTCTCTCACTCCTCTAATACCCTTTCTTCTTCTTCCCCTCCCCAAGTTGTCATGACCCCTTGTGCTGCATGCAAAATCCTTAGACGAAGATGTGCTGAGAAATGTGTGTTGGCACCTTATTTCCCTCCCACCGAACCCGCCAAGTTCACCATTGCTCATCGAGTCTTCGGTGCCAGCAACATCATCAAGTTCTTACAGGAACTTCCAGAGGGTCAGAGAGCTGATGCAGTGGCGAGCATGGTTTACGAGGCTGGTGCAAGAATAAGAGACCCTGTATATGGATGTGCAGGTGCAATTTGCCAGCTCCAAAAGCAAGTGAATGAACTTCAAGCCCAGTTAGCAAAGGCACAAGCTGAAGTTGTAAACATGCAATTCCAACAAGCCAATCTCGTGGCTCTAATTTGCATGGAAATGTCACAGACTCCACAGGAATCACCCCAACAATCCGTGGACAATTTCATCGCGAGTCCTTCCCGCAGCAGTGGGTATCAGAACAATCTCAGTTTCTTTGAGGATAACACCAACCTAAACTCTTTGTGGGAGCCTCTTTGGACATGA 597 0.4807 MESDANTLTSSPTFSHSSNTLSSSSPPQVVMTPCAACKILRRRCAEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPEGQRADAVASMVYEAGARIRDPVYGCAGAICQLQKQVNELQAQLAKAQAEVVNMQFQQANLVALICMEMSQTPQESPQQSVDNFIASPSRSSGYQNNLSFFEDNTNLNSLWEPLWT* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0299 198 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 10 195 - -
Vra4g0299 198 ProSiteProfiles LOB domain profile. 32 133 IPR004883 -
Vra4g0299 198 Coils Coil 112 139 - -
Vra4g0299 198 Pfam Lateral organ boundaries (LOB) domain 33 130 IPR004883 -
Vra4g0299 198 MobiDBLite consensus disorder prediction 1 28 - -
Vra4g0299 198 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 10 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0299 Vra-Chr4 5676999 5678262 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0299 1 198 AS2 family AT1G07900 62.189 2.20e-81 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vra4g0299 LOB 4.3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0299 - - gmx:100819336 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0299 4 5676999 5678262 Vra4g0299 4 5676999 5678262 ECH
Vra4g0299 4 5676999 5678262 Vra2g0676 2 5697622 5699739 ECH
Vra4g0299 4 5676999 5678262 Vra2g0676 2 5697622 5699739 PCT