Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0294 ATGGAGCAGTTCGTCGAAAACTTGCCGCCGATGGATCTGATGCGATCTGAGAAGATGACCTTTGTTCAGCTTATCATTCCGGCCGAATCCGCACACCGTGCCATCTCCTATTTAGGCGAACTCGGTCTTCTCCAATTCCGCGACTTAAATGCTGATAAAAGTCCCTTTCAGAGAACATTTGTTAATCAGGTCAAACGATGTGCAGAAATGTCAAGAAAACTAAGATTCTTCAAGGATCAAATCAGTAAAGCTGGCCTCTTGTCTTCTTCTCGGACTGCATTGCAACCAGATATTGACTTGGAGGATTTGGAGATGCAACTTGCTGAACATGAACATGAGCTGATTGAAATGAACTCTAATAGTGACAAACTCCGGCAATCATATAATGAACTCTTGGAATTCAAGATTGTATTACAAAAGGCATGTGGCTTTCTTGTTTCAAGTCATAACCTTGCACTTTCAGATGAAAGGGAACTACAAGAGAATGTATTTTCAAATGATGCCTATGTAGAGACAGCATCTTTGCTTGAACAGGAAATGAGGCCTCAGTCATCAAATTCGTCTGGTTTAAGATTTATCAGTGGGATAATCTGTAAATCCAAGGTTCTTAGGTTTGAAAGAATGTTGTTTCGTGCTACAAGAGGCAATATGCTATTCAACCAGGAACCAGCTGATGAACAAATCATGGATCCTGTTTCAACTGAGATGATTGAAAAAACAGTGTTTGTCGTGTTTTTCTCTGGGGAACAGGCAAGAACAAAGATTCTGAAAATCTGTGAGGCATTCGGTGCAAATTGTTATCCTGTTCCTGAAGATATTAGCAAGCAGAGGCAAATAACTAGAGAGGTTTCATCCCGTCTTACAGACTTAGAGGCAACTTTGGAAGCTGGGATTAGGCACCGGAACAAGGCTCTAGCTTCTGTTGCAGACCATCTAGGGAAATGGATGAACATGGTAAGAAGAGAGAAGGCTGTGTACGATACACTGAACATGTTAAACTTCGATGTTACAAAAAAATGTCTTGTGGGAGAGGGCTGGTGCCCTCTGCTTGCCAAAACACAGATGCAGGAGGCACTGCAACGTGCAACTTTTGATAGCAATTCTCAAGTTGGCATAATCTTCCATCCACTAGAGGCAGTGGAGTCACCACCTACATACTTTCGGACCAACACTTTCACAAATCCATATCAAGAAATTGTTGATGCATACGGTGTTGCAAGATACCAAGAGGCGAACCCTGCAGTTTACACAACTATTATATTCCCTTTCCTATTTGCTTTGATGTTTGGGGACTGGGGTCATGGAATTTGCCTGTTGCTAGGAGCATTGGTTCTTATAGCACGTGAAAACAAGCTCAGCACACAGAAACTTGGAAGCTTTATGGAGATGCTGTTTGGTGGGCGCTATGTGCTTCTTCTAATGGCTCTATTTTCAATCTATTGTGGCTTAATCTACAATGAATTCTTCTCTGTCCCTTTCCACATATTTGGTGCATCTGCATACAAATGCCGCGATAGTTCTTGCAGGGATGCACATACTATTGGTTTAGTCAAATACCAAGATCCATACCCATTTGGTGTGGATCCCAGCTGGCGTGGAAGTCGTTCAGAATTGCCTTTCCTGAATTCTTTGAAGATGAAGATGTCCATTTTGTTTGGTGTCGCACATATGAACTTAGGAATTATTTTAAGTTATTTTAATGCACGGTTCTTTGGAAGCTCATTGGATATAAGGTACCAGTTTGTGCCACAGATGATTTTCCTTAACTGTCTATTTGGGTATCTTTCCCTTCTCATTGTTGTTAAGTGGTGTACTGGCTCTCAAGCAGACCTTTATCATGTAATGATATACATGTTTTTAAGCCCCACGGACAATCTTGGCGAGAATCAGTTGTTCTGGGGCCAAAGACCACTTCAAATTGTGTTATTGCTTTTGGCTGTAATTGCAGTTCCATGGATGCTCTTTCCAAAACCTTTTATATTAAAGAAGCTTCATACTGAGAGATTTCAAGGTCGTAGTTATGGCTTACTAAACACTTCTGAGGTGGATCTTGAGGCGGAGCCTGATTCTGCCAGACAACATCATGAAGAATTCAATTTCAGTGAAGTCTTTGTTCACCAAATGATCCATGCCATTGAATTTGTTCTAGGTTCTGTTTCTAATACAGCATCATATCTTCGTCTTTGGGCATTAAGTTTGGCTCACTCTGAACTTTCTACTGTTTTCTATGAGAAAGTCCTGCTTTTAGCTTGGGGATATGACAATCTTATCATTCGATTGGTGGGGCTCACCGTTTTTTCCTTTGCAACTGCCTTTATACTACTTATGATGGAGAGTCTCAGTGCTTTTCTTCATGCGCTGCGGCTTCACTGGGTAGAATTTCAAAATAAATTCTACCATGGCGATGGCTATAAGTTCAGACCTTTTTCATTTGCTTCCTTAACAGAGGAAGATGATTGA 2460 0.4114 MEQFVENLPPMDLMRSEKMTFVQLIIPAESAHRAISYLGELGLLQFRDLNADKSPFQRTFVNQVKRCAEMSRKLRFFKDQISKAGLLSSSRTALQPDIDLEDLEMQLAEHEHELIEMNSNSDKLRQSYNELLEFKIVLQKACGFLVSSHNLALSDERELQENVFSNDAYVETASLLEQEMRPQSSNSSGLRFISGIICKSKVLRFERMLFRATRGNMLFNQEPADEQIMDPVSTEMIEKTVFVVFFSGEQARTKILKICEAFGANCYPVPEDISKQRQITREVSSRLTDLEATLEAGIRHRNKALASVADHLGKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPLLAKTQMQEALQRATFDSNSQVGIIFHPLEAVESPPTYFRTNTFTNPYQEIVDAYGVARYQEANPAVYTTIIFPFLFALMFGDWGHGICLLLGALVLIARENKLSTQKLGSFMEMLFGGRYVLLLMALFSIYCGLIYNEFFSVPFHIFGASAYKCRDSSCRDAHTIGLVKYQDPYPFGVDPSWRGSRSELPFLNSLKMKMSILFGVAHMNLGIILSYFNARFFGSSLDIRYQFVPQMIFLNCLFGYLSLLIVVKWCTGSQADLYHVMIYMFLSPTDNLGENQLFWGQRPLQIVLLLLAVIAVPWMLFPKPFILKKLHTERFQGRSYGLLNTSEVDLEAEPDSARQHHEEFNFSEVFVHQMIHAIEFVLGSVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLIIRLVGLTVFSFATAFILLMMESLSAFLHALRLHWVEFQNKFYHGDGYKFRPFSFASLTEEDD* 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0294 819 PIRSF ATP6V0A1 9 819 IPR026028 GO:0000220|GO:0046961
Vra4g0294 819 Pfam V-type ATPase 116kDa subunit family 37 811 IPR002490 GO:0033179|GO:0046961|GO:1902600
Vra4g0294 819 PANTHER VACUOLAR PROTON ATPASES 5 819 IPR002490 GO:0033179|GO:0046961|GO:1902600
Vra4g0294 819 Coils Coil 100 127 - -
Vra4g0294 819 PANTHER VACUOLAR PROTON ATPASE A1 5 819 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0294 Vra-Chr4 5621243 5631589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0294 1 812 Primary Pumps ATPases(2) AT2G28520 80.613 0.0 1368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0294 K02154 - gmx:100793301 1565.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0294 4 5621243 5631589 Vra4g0294 4 5621243 5631589 ECH
Vra4g0294 4 5621243 5631589 Vra2g0669 2 5595438 5607481 PCT