Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0284 ATGGCCACAACACAAAGGACTCCGTTCTTGGCTTTGTCTGCTTCAAGCCTTGAACGGAGAGAAAACGGAAAAAAAAACATGGGTTGCTTTCGTTGCACAGGCAAACCAACCAAAAAATCCAACAACGTTAATCGCACCCAGAAGCACATTGCTGCTGTTGTCAAAATTAATTTGAAAGTGAATGGTAAAAGTGAAGATAATCATCGAAAGCCTGATCAGCTATCAGTGGACGTGAAGAATTTGAATTTACAAGAGGTTTCTGATGAGGTAAACGTTAGAAGTTACCGAGCACAGACATTTACTTTTGACGAGCTTGCAGCTGCAACAAGGAAATTTAGGTCAGATTGCTTTCTGGGCGAAGGAGGGTTTGGCAAGGTTTACAAGGGGTGCATAGAGAAATTAAATCAGGTTGTGGCAGTAAAGCAACTAGACCCTTATGGGCATCAAGGAATTAGGGAATTTGTTGTTGAAGTATTGACATTGAGTTTGGCAGATCACCCTAATTTGGTAAAGTTAATTGGGTTTTGTGCTGAGGGAGAGCAGAGGCTATTGGTTTATGAGTACATGCCACTTGGATCTTTGGAGAACCGTTTGCAGGATCTTCCACGTAGCAGAAAAGCACTTGATTGGAACACGAGAATAAAAATTGCAGCTGGTGCAGCTAGAGGTTTAGAGTATTTGCATGATAAAATGAAGCCTCCTGTCATATACCGTGACTTGAAGTGCTCAAATATTTTATTAGGTGAGGATTATCATCCCAAGTTATCAGATTTTGGGTTGGCAAAAGTAGGACCAAGTGGTGATAAGACCCATGTTTCAACAAGAGTTATGGGAACATATGGCTATTGTGCACCAGATTATGCAATGACGGGTCAATTGACGTTCAAGTCTGACATTTATAGCTTTGGAGTTGTTCTTTTGGAGATCATCACAGGCAGAAAGGCCATTGACCACATGAAACCTCCTAAAGAACAAAATCTAGTTGCATGGGCAAAACCTTTGTTCAAAGACAGAAAAAGATTCTGTGAGATGGTTGACCCATTGCTTGAAGGTCGGTATCCAGTAAGAGGTTTGTACCAAGTTCTTGCTATTGCTGCCATGTGTGTTCAAGAACAACCTAGTATGCGGCCTGTCATAGCCGATGTGGTAACAGCTCTAAATTACCTTGAATCCCAGAAATACGATCCCCAAATTCATCTAATTCAAAGCTCTAGAAATGGTTTCTATTCTTCAAGAGCAAGAAGCCAAAATCGTAGACCAGCTGGCTATGGCTCTGAGCCAAGACCGTGCAAAGCTGGTCATAAATCACTTGTTAGTGATGGCAATAGTAGTAGTGGTTCGGAGACAGAAAGCTATATAAAAGGTATATCTTCTCCAAGAACACGAAGTGAAGGTCAACAACATTTTGATAGAAATAATGATTCCGGGACAGACAGTTCTGCAGATTAG 1449 0.4127 MATTQRTPFLALSASSLERRENGKKNMGCFRCTGKPTKKSNNVNRTQKHIAAVVKINLKVNGKSEDNHRKPDQLSVDVKNLNLQEVSDEVNVRSYRAQTFTFDELAAATRKFRSDCFLGEGGFGKVYKGCIEKLNQVVAVKQLDPYGHQGIREFVVEVLTLSLADHPNLVKLIGFCAEGEQRLLVYEYMPLGSLENRLQDLPRSRKALDWNTRIKIAAGAARGLEYLHDKMKPPVIYRDLKCSNILLGEDYHPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLEIITGRKAIDHMKPPKEQNLVAWAKPLFKDRKRFCEMVDPLLEGRYPVRGLYQVLAIAAMCVQEQPSMRPVIADVVTALNYLESQKYDPQIHLIQSSRNGFYSSRARSQNRRPAGYGSEPRPCKAGHKSLVSDGNSSSGSETESYIKGISSPRTRSEGQQHFDRNNDSGTDSSAD* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0284 482 CDD STKc_IRAK 118 387 - -
Vra4g0284 482 Gene3D Transferase(Phosphotransferase) domain 1 189 407 - -
Vra4g0284 482 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL5-RELATED 27 418 - -
Vra4g0284 482 MobiDBLite consensus disorder prediction 437 463 - -
Vra4g0284 482 ProSiteProfiles Protein kinase domain profile. 112 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0284 482 MobiDBLite consensus disorder prediction 409 482 - -
Vra4g0284 482 SUPERFAMILY Protein kinase-like (PK-like) 98 411 IPR011009 -
Vra4g0284 482 PANTHER OS07G0668900 PROTEIN 27 418 - -
Vra4g0284 482 SMART serkin_6 112 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0284 482 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Vra4g0284 482 Gene3D Phosphorylase Kinase; domain 1 81 188 - -
Vra4g0284 482 ProSitePatterns Protein kinases ATP-binding region signature. 118 141 IPR017441 GO:0005524
Vra4g0284 482 Pfam Protein tyrosine and serine/threonine kinase 117 385 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0284 Vra-Chr4 5478501 5481341 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0284 27 389 Glycoside Hydrolase AT3G07070 56.250 1.61e-142 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vra4g0284 PK_Tyr_Ser-Thr 1.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0284 - - gmx:100794680 695.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0284 4 5478501 5481341 Vra4g0284 4 5478501 5481341 ECH
Vra4g0284 4 5478501 5481341 Vra2g0661 2 5381788 5385849 ECH
Vra4g0284 4 5478501 5481341 Vra2g0661 2 5381788 5385849 PCT