Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0278 ATGTTTGAACACTCTGCCACTGCATCACCCTTTCCTTCACCTTCTTCTCTCTTCCCTCAGCTCACTCAATTCGACACCCTCTCCCAGCTCAACAACTCCGACACCAGTTACTGCTACCACAACAACAGTACCAGTAACTGTAGCAGTGGCTATAGCAGTTATGGTGCCTCTCCCACTTCTGTTCCTACTCCCACCTTTATGCAGAGGAGTGTCAGTAGTAACTCCTTCAACTACACCAACAATGGCACCCACCATCCTCTTTCTGCTTTCTTCAACGAATTGCTCGACTCCCATCATGCTCCTGTTAGGAGAGTTTGCAGTGCTGGTGATCTCCAGGGGATTAATGGAATTCAACACAATCACCTCTCAGATAGTCCGTTGTCAAGCGAAAGCAATATGATTATAGAAGGTATGAACAGAGCTTGTAGATATAGCCCAGAGGAGAAGAAGGTGAGAATTGAGAGATACAGAAGCAAGAGGAACCAGAGGAATTTCAACAAGAAAATTAAGTATGCTTGCAGGAAAACATTGGCAGACAGCAGGCCACGCATCAGAGGAAGGTTTGCAAGGAATGATGAAATTGACAAGAACACTTCAATTCAATGGAGCCAAAGTGGAGGAGATGAAGAGGATGAAGAAGATGAGAATTGGTTCACCATCTTAGATTCCTTAGTTGCTGCAAATTTTGCTCAAGAGTCTCAAGGCAGCTGTTCCTCCTTTGGTGTATTCTATTAG 735 0.4476 MFEHSATASPFPSPSSLFPQLTQFDTLSQLNNSDTSYCYHNNSTSNCSSGYSSYGASPTSVPTPTFMQRSVSSNSFNYTNNGTHHPLSAFFNELLDSHHAPVRRVCSAGDLQGINGIQHNHLSDSPLSSESNMIIEGMNRACRYSPEEKKVRIERYRSKRNQRNFNKKIKYACRKTLADSRPRIRGRFARNDEIDKNTSIQWSQSGGDEEDEEDENWFTILDSLVAANFAQESQGSCSSFGVFY* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0278 244 PANTHER CCT MOTIF PROTEIN 6 244 - -
Vra4g0278 244 Pfam CCT motif 151 191 IPR010402 GO:0005515
Vra4g0278 244 ProSiteProfiles CCT domain profile. 149 191 IPR010402 GO:0005515
Vra4g0278 244 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 6 244 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0278 Vra-Chr4 5405562 5407958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0278 145 196 C2C2-CO-like Transcription Factor Family AT5G15850 48.077 2.82e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vra4g0278 CCT 8.8e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0278 - - vun:114184224 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0278 4 5405562 5407958 Vra4g0278 4 5405562 5407958 ECH
Vra4g0278 4 5405562 5407958 Vra2g0655 2 5307963 5310534 PCT