Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0275 ATGATTGATCGGAGAAATCTTGGTTTTTTTCTCTGTTTTTTATCAATCTTCCCTCTTGTGTGTTTTTCTGCCACCTTTGTTCCAGTTGATAATTATCTTATAGACTGTGGAGCATCTGCAAATACTACAGTAGGTAGGCGCAATTTCACAGCAGATAGTTTGTTCAAGGATCTCCTTTCTACACAAGAAGATATTCTTGCCAATTCCTCCTCAAAATCAAGCGCTTCTTCCTCTGATGATTGGCCTCTCTATCAAACTGCAAGAATCTTCAATGGACCCTCAAAGTACACCTTTTCAATTAAGCAAAAGGGGAGACACTGGATCCGTCTGTATATCTTTCCTTTTACTCACGAAAAGTACAATTTGGGTGCTGCAAATTTCACTGTCGCCACGCAAGACCATGTTCTTTTCAGTAGCTCCAGCATGCAGAAAGATCCTGTGATGAAGGAGTACTCTGTGAATGTAACCTCAGACAACCTCGTTATCACCTTTGCCCCTTCTGGCAATTCCACTGCCTTTGTGAATGCCATTGAAGTTGTTTCTGCCCCCGATGACCTAATTGATGATGTTTTTTCCGTCTTAGATCAATCGTTTACCTTATCTGGTTTGGTGACGCAATCACTGGAGACAGTTTGGAGGGTTAACATGGGTGGTCCAACTGTGACCCCCGTGAATGACACCCTTCAAAGAACTTGGATTCCAGATCAAAGGTTCCTTTTGGAACCTAACCTTGCCAAATCTTTTAGTAATATTGCTGCTGTCAAGTATGAGAAAGGTGGTCTAACAACAGAAAACACCGCTCCCGCTACTGTTTATGGTACCCTCTCAGAGATGAACTCGTCCTTTGATCCCCGGAGTAATTTCAATGTGACATGGAAGTTTGATGTGAGTCCTGGATTTCAGTACCTTGTTCGATTTCACTTCTGTGATGTGGTCTCTAACGGTCTCAATTCACTCTACTTCAATATTTATATTGACTCCAAGATGGCTGCTGCTAATTTTGATCTCAGTACTCATACTAATAATGCTTTGGGGGTTCCATATCATATGGATTTGGTTACACCGTTGGCTGTGAACAATACACTTCGTGTAAGTATTGGTCCTTCTGGTTTAAGTAAGGATTACCCGAATGCAATTTTGAATGGGCTGGAGATCATGAAAATAAACAATTCAATGGGCAGTCTCATCACAGGAACAGTACCTGCAGCTATTGGTGCAGGTTCAAGTTCTAAGAGTATTGGCATGATTGTGGGTGTGGTTGTTGGTGTAGTTGGTGCAGTTGTCTTGGCTGGACTTATCTTTGTATTATGCATGAGGAGACGAAAGTTGGCACGGCAAAGGCAGTCAAAGACATGGGTTCCTTTATCCATCAATGATGGAACTACTTCTCATACCATGGGAAGTAAATATTCTAATGGCACGACACTAAGTGCTGCTTCAAACCATGAGTACCGAGTGCCTCTTGTTGCAGTTCAGGAGGCTACAAACAACTTTGATGAGAGTTGGGTTATTGGGATAGGTGGCTTTGGTAAAGTGTACAAAGGAGAGTTAAGTGATGGCACAAAAGTGGCAGTTAAGAGGGGAAATCCACGGTCCCAGCAGGGGCTTGCAGAGTTCCAAACTGAAATTGCAATGCTGTCTCAGTTCCGCCATCGCCATCTGGTGTCTTTGATTGGTTATTGTGATGAAAGGAATGAAATGATCTTGATATATGAGTATATGGAGAAAGGAACTCTCAAGAGTCATTTATATGGCTCAGATCTGCCTAGCTTAAGCTGGAAGGAGAGGCTTGAGATATGCATTGGATCAGCCAGAGGACTTCATTATCTTCACACTGGCTATGCTAAAGCTGTTATTCACCGTGATGTGAAGTCTGCAAATATCCTACTTGATGAGAAACTAATGGCTAAAGTCGCTGATTTTGGACTGTCAAAGACGGGGCCTGAAATTGACCAGACACATGTGAGCACAGCTGTGAAAGGTAGTTTTGGGTACCTGGATCCAGAGTATTTCAGGAGGCAACAACTGACAGAAAAGTCAGATGTGTATTCATTTGGGGTAGTTCTGTTTGAAGTTCTTTGTGCAAGACCTGTCATAGATCCAACACTTCCTAGGGAAATGGTAAACTTGGCAGAATGGGCAATGAAATGGCAGAAGAAGGGGCAGTTGGAGCAGATCATAGATGAAAGACTTGCAGGAAAAATCAGACCAGAATCTCTTAGGAAGTTTGGAGAAACTGCTGAGAAATGCCTGGCTGATTATGGTGTTGACAGACCTTCTATGGGAGATGTCTTGTGGAATTTGGAGTATGCTCTCCAACTTCAAGAGGCTGTGGTTGAAGGTGATCCTGAAGAAAACAGCACCAATATGATTGGTGAACTCTCTCCACAGGTCAAGAATATCAGCCAGGATGCAAGTGCTTCTACTACACAATTTGAAGGCACAAGCCTTGATGATCTCTCGGGTGTTTCTATGAGTAGGGTCTTCTCACAATTGGTGAAGTCTGAGGGTAGATAG 2517 0.4283 MIDRRNLGFFLCFLSIFPLVCFSATFVPVDNYLIDCGASANTTVGRRNFTADSLFKDLLSTQEDILANSSSKSSASSSDDWPLYQTARIFNGPSKYTFSIKQKGRHWIRLYIFPFTHEKYNLGAANFTVATQDHVLFSSSSMQKDPVMKEYSVNVTSDNLVITFAPSGNSTAFVNAIEVVSAPDDLIDDVFSVLDQSFTLSGLVTQSLETVWRVNMGGPTVTPVNDTLQRTWIPDQRFLLEPNLAKSFSNIAAVKYEKGGLTTENTAPATVYGTLSEMNSSFDPRSNFNVTWKFDVSPGFQYLVRFHFCDVVSNGLNSLYFNIYIDSKMAAANFDLSTHTNNALGVPYHMDLVTPLAVNNTLRVSIGPSGLSKDYPNAILNGLEIMKINNSMGSLITGTVPAAIGAGSSSKSIGMIVGVVVGVVGAVVLAGLIFVLCMRRRKLARQRQSKTWVPLSINDGTTSHTMGSKYSNGTTLSAASNHEYRVPLVAVQEATNNFDESWVIGIGGFGKVYKGELSDGTKVAVKRGNPRSQQGLAEFQTEIAMLSQFRHRHLVSLIGYCDERNEMILIYEYMEKGTLKSHLYGSDLPSLSWKERLEICIGSARGLHYLHTGYAKAVIHRDVKSANILLDEKLMAKVADFGLSKTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPVIDPTLPREMVNLAEWAMKWQKKGQLEQIIDERLAGKIRPESLRKFGETAEKCLADYGVDRPSMGDVLWNLEYALQLQEAVVEGDPEENSTNMIGELSPQVKNISQDASASTTQFEGTSLDDLSGVSMSRVFSQLVKSEGR* 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0275 838 ProSitePatterns Protein kinases ATP-binding region signature. 504 526 IPR017441 GO:0005524
Vra4g0275 838 Gene3D - 31 183 - -
Vra4g0275 838 Gene3D - 206 390 - -
Vra4g0275 838 PANTHER OS07G0166700 PROTEIN 19 830 IPR045272 GO:0004714|GO:0006468
Vra4g0275 838 Gene3D Transferase(Phosphotransferase) domain 1 574 791 - -
Vra4g0275 838 CDD STKc_IRAK 504 769 - -
Vra4g0275 838 SMART serkin_6 498 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0275 838 Pfam Malectin-like domain 34 388 IPR024788 -
Vra4g0275 838 Gene3D Phosphorylase Kinase; domain 1 459 573 - -
Vra4g0275 838 ProSiteProfiles Protein kinase domain profile. 498 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0275 838 SUPERFAMILY Protein kinase-like (PK-like) 476 769 IPR011009 -
Vra4g0275 838 PANTHER RECEPTOR-LIKE PROTEIN KINASE THESEUS 1 19 830 - -
Vra4g0275 838 ProSitePatterns Serine/Threonine protein kinases active-site signature. 618 630 IPR008271 GO:0004672|GO:0006468
Vra4g0275 838 Pfam Protein tyrosine and serine/threonine kinase 503 714 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0275 Vra-Chr4 5387762 5391095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0275 10 838 Receptor kinase-like Gene Family AT3G46290 65.114 0.0 1077
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vra4g0275 Malectin_like 4.6e-36 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0275 - - gmx:100305416 1368.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0275 4 5387762 5391095 Vra4g0275 4 5387762 5391095 ECH
Vra4g0275 4 5387762 5391095 Vra2g0653 2 5290079 5293349 ECH
Vra4g0275 4 5387762 5391095 Vra2g0653 2 5290079 5293349 PCT