Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0263 ATGGGTTACGATCCAAACCATTTCATAGGTAGCCCGTATATATGTTGGAACCAAACCCTAAATCTAAGGTTGGCACTGCTTCTCAGTCGCAGGGTTTTCGAAGATTTAAGAACTAGGGTTTTTCCCCTTTCGCGACTCATGGCTCCCAAAGCTGATAGTTCAAAGAAGGCCGATCCTAAGGCACAAGCCTTGAAAACTGCCAAAGCAGTTAAGTCAGGTGCTACATTCAAGAAGAAGGCCAAAAAGATCCGAACTTCTGTTACCTTCCATCGGCCAAAGACTTTAAAAAAGGATAGGAACCCCAAATACCCACGCATTAGTGCTCCACCCCGTAATAAGCTTGATCACTATCAGATACTGAAGTATCCTCTAACAACCGAGTCCGCAATGAAGAAGATTGAAGATAACAACACTTTGGTATTCATTGTTGACCTGCGCGCTGACAAGAAGAAGATCAAGGACGCAGTGAAGAAGATGTACGATATTCAGGCCAAGAAGGTTAATACCTTGATTAGGCCTGATGGGACTAAGAAGGCTTATGTCAGATTGACACCTGACTATGATGCCCTGGACGTGGCCAACAAGATTGGAATTATCTAA 600 0.4383 MGYDPNHFIGSPYICWNQTLNLRLALLLSRRVFEDLRTRVFPLSRLMAPKADSSKKADPKAQALKTAKAVKSGATFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0263 199 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 116 192 IPR012678 GO:0003735|GO:0005840|GO:0006412
Vra4g0263 199 Pfam Ribosomal protein L23, N-terminal domain 60 109 IPR005633 -
Vra4g0263 199 Pfam Ribosomal protein L23 119 181 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vra4g0263 199 TIGRFAM uL23_arch: ribosomal protein uL23 123 199 IPR019985 GO:0003735|GO:0005840|GO:0006412
Vra4g0263 199 PANTHER 60S RIBOSOMAL PROTEIN L23A-2 47 199 - -
Vra4g0263 199 PANTHER 60S RIBOSOMAL PROTEIN L23A 47 199 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vra4g0263 199 Hamap 50S ribosomal protein L23 [rplW]. 119 199 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vra4g0263 199 ProSitePatterns Ribosomal protein L23 signature. 177 192 IPR001014 -
Vra4g0263 199 Gene3D - 80 199 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0263 Vra-Chr4 5282146 5283813 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0263 47 199 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 87.662 6.38e-67 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0263 K02893 - jre:109021970 270.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0263 4 5282146 5283813 Vra4g0263 4 5282146 5283813 ECH
Vra4g0263 4 5282146 5283813 Vra2g0635 2 5007097 5008733 ECH
Vra4g0263 4 5282146 5283813 Vra2g0635 2 5007097 5008733 PCT