Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0260 ATGCCGATTTCTAGAATTGCCGTTGGAAATTCTTCCGAGTTGACCCATGTGGACGCGCTTAAGGCTGCTCTTGCCGAGTTCATCTCAATGCTCATTTTCGTTTTCGCAGGGGAAGGTTCTGGCATGGCTTTTAATAAGCTGACAAACAATGGTTCGGCAACACCAGCAGGGTTAGTGGCAGCGTCACTGTCACATGCATTTGCACTTTTTGTTGCTGTCTCAGTTGGTGCAAACATTTCTGGTGGTCATGTGAATCCTGCTGTCACTTTCGGTGCCTTTGTTGGAGGCCACATTACTCTCTTCAGAAGCATTTTATACTGGATAGCTCAGTTGCTTGGCTCTGTGGTTGCTTGTTTGCTCCTTAAATTTGCCACTGGTGGAATGGAAACATCTGCATTTGCACTTTCTTCCGGTGTTGGAGCAGGGAACGCTCTGGTGTTTGAAATTGTGATGACTTTTGGGTTGGTTTACACGGTGTACGCAACTGCAGTGGATCCAAAGAAGGGTGACATTGGCATAATTGCTCCAATTGCAATTGGTTTCATAGTTGGTGCTAACATCTTAGCTGGTGGTGCTTTTGACGGTGCATCCATGAACCCTGCTGTATCTTTTGGGCCTGCTGTTGTCAGTTGGACTTGGGCTAACCATTGGGTTTATTGGGTCGGCCCATTTGCCGGTGCTGCCATTGCTGCTGTTGTCTACGAGATTTTGTTCATCAGCCAAAACACTCATGAACAGCTCCCCGTCACTGATTATTAA 759 0.469 MPISRIAVGNSSELTHVDALKAALAEFISMLIFVFAGEGSGMAFNKLTNNGSATPAGLVAASLSHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLFRSILYWIAQLLGSVVACLLLKFATGGMETSAFALSSGVGAGNALVFEIVMTFGLVYTVYATAVDPKKGDIGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWANHWVYWVGPFAGAAIAAVVYEILFISQNTHEQLPVTDY* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0260 252 Gene3D Glycerol uptake facilitator protein. 4 252 IPR023271 -
Vra4g0260 252 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra4g0260 252 PANTHER AQUAPORIN-8 1 252 IPR034294 -
Vra4g0260 252 PANTHER MAJOR INTRINSIC PROTEIN-RELATED 1 252 - -
Vra4g0260 252 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Vra4g0260 252 Pfam Major intrinsic protein 13 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra4g0260 252 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra4g0260 252 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra4g0260 252 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra4g0260 252 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra4g0260 252 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra4g0260 252 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra4g0260 252 SUPERFAMILY Aquaporin-like 13 243 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0260 Vra-Chr4 5260263 5261621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0260 1 252 Major Intrinsic Protein MIP AT4G01470 79.365 1.45e-143 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0260 K09873 - gmx:547794 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0260 4 5260263 5261621 Vra4g0260 4 5260263 5261621 ECH