Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0259 ATGGTTCAACAGGAAGTGCGTAAAGGTCCATGGACAGAACAGGAAGACTTCAAATTGGTGTCGTTTGTTGGCTTGTTTGGAGACCGTAGATGGGACTTTATTGCTAAGGTATCAGGTTTGAATAGAACAGGTAAAAGTTGCAGATTACGGTGGGTTAATTACCTTCATCCTGGTCTCAAACGTGGAAAGATGACACCCCAGGAAGAAAGACTCGTGCTTGAGCTTCATTCAAAATGGGGAAATAGGTGGTCAAGAATCGCTCGCAAGTTACCAGGGCGCACTGACAACGAGATCAAGAACTACTGGAGGACTCTGATGAGGAAAAAGGCTCAGGACAAAAAAAGAGGAGAAGCTGCATCATCTACACCAACAAAACCTTCTTCCAGTGTTCATTCCTCAATATCAGTATCCTCAAAGAAGCATGAAGTGGATCCACACGGTTCAAAAAAGGCAGGAGAAGAGAGCTTTTATGACACAGGAGGAGCTTCAACCCAAGATGAAGGTGAAGGTGAAGGTGAAGGTGAGTTCTCAATGGATGATATATGGAAAGATATAGACATGTCAGAAGAGAACAACAACAGTTTTGTTTATGGAGAGAGTGAAGAGGGTTGCAACTTGTCTTGCCCATCTGCATCATCATCGTGGGAGTATTGTTATGAGAATCTGAGGGTGATGATGGATGAGGAAAGTTTGTTTTGCCCCATGAGTGAACCATATTTTTATGCATTAAACGGCTAA 738 0.4309 MVQQEVRKGPWTEQEDFKLVSFVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHSKWGNRWSRIARKLPGRTDNEIKNYWRTLMRKKAQDKKRGEAASSTPTKPSSSVHSSISVSSKKHEVDPHGSKKAGEESFYDTGGASTQDEGEGEGEGEFSMDDIWKDIDMSEENNNSFVYGESEEGCNLSCPSASSSWEYCYENLRVMMDEESLFCPMSEPYFYALNG* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0259 245 PANTHER TRANSCRIPTION FACTOR MYB48-RELATED 3 232 - -
Vra4g0259 245 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 232 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vra4g0259 245 SUPERFAMILY Homeodomain-like 6 102 IPR009057 -
Vra4g0259 245 SMART sant 7 57 IPR001005 -
Vra4g0259 245 SMART sant 60 108 IPR001005 -
Vra4g0259 245 MobiDBLite consensus disorder prediction 120 136 - -
Vra4g0259 245 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Vra4g0259 245 MobiDBLite consensus disorder prediction 108 176 - -
Vra4g0259 245 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Vra4g0259 245 Pfam Myb-like DNA-binding domain 61 105 IPR001005 -
Vra4g0259 245 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Vra4g0259 245 CDD SANT 63 106 IPR001005 -
Vra4g0259 245 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Vra4g0259 245 CDD SANT 10 55 IPR001005 -
Vra4g0259 245 Gene3D - 63 134 - -
Vra4g0259 245 MobiDBLite consensus disorder prediction 137 153 - -
Vra4g0259 245 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Vra4g0259 245 Gene3D - 8 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0259 Vra-Chr4 5254305 5259132 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0259 1 230 MYB Transcription Factor Family AT5G59780 60.086 5.38e-83 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra4g0259 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0259 K09422 - tcc:18590753 295.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0259 4 5254305 5259132 Vra4g0259 4 5254305 5259132 ECH
Vra2g0628 2 4962407 4963807 Vra4g0259 4 5254305 5259132 PCT