Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0256 ATGTATATATATTTAAGAGTGTACGTAGTGTCTTTAAATTCTCATATTCTCATGAAGAGAGACAGAGAAGAGGGTGAGTTCGACAACATGGCTAACTGTTTGATGCTATTGACCAAAGTTGGTGAGAGTGAATCTAAGGGTAGAGATATAAGGGATGCTGAAATTGGTGATTTCAAGTGCAAAACTTGCAGTAGAAGGTTTTCTTCTTTTCAAGCACTTGGTGGCCACAGAGCAAGTCACAAGAAACCCAAGCTCATGATCACAGATCTTTCCTGCCGTCACCACTTACCTTGTACTCCAACCACCAAACAACAACCTCGGATGCACCCGTGTCCCATTTGTGGGCTTCAGTTTGCCATTGGACAAGCTTTGGGAGGACACATGAGAAAACATAGAACCGCCATTAATGATCGGAGAGATTCGGATTCTTTGTCCATTCTGAAGAAATCTAAAAATGGTGGAAGGTTGAATTTGTGTTTGGACTTGAACTTGATGCCATTGGAGGATGATGATCTTAAGCTCAACCTAAGAACACCCGTTCTCAATTGTTTCATTTGA 558 0.414 MYIYLRVYVVSLNSHILMKRDREEGEFDNMANCLMLLTKVGESESKGRDIRDAEIGDFKCKTCSRRFSSFQALGGHRASHKKPKLMITDLSCRHHLPCTPTTKQQPRMHPCPICGLQFAIGQALGGHMRKHRTAINDRRDSDSLSILKKSKNGGRLNLCLDLNLMPLEDDDLKLNLRTPVLNCFI* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0256 185 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Vra4g0256 185 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
Vra4g0256 185 Gene3D Classic Zinc Finger 55 131 - -
Vra4g0256 185 ProSitePatterns Zinc finger C2H2 type domain signature. 111 131 IPR013087 -
Vra4g0256 185 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 22 183 - -
Vra4g0256 185 SMART c2h2final6 109 131 IPR013087 -
Vra4g0256 185 SMART c2h2final6 58 80 IPR013087 -
Vra4g0256 185 PANTHER ZINC FINGER PROTEIN ZAT5 22 183 - -
Vra4g0256 185 SUPERFAMILY beta-beta-alpha zinc fingers 58 131 IPR036236 -
Vra4g0256 185 Pfam C2H2-type zinc finger 109 133 - -
Vra4g0256 185 Pfam C2H2-type zinc finger 58 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0256 Vra-Chr4 5215380 5216312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0256 18 176 C2H2 Transcription Factor Family AT2G28710 46.386 1.00e-38 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra4g0256 zf-C2H2_6 3.3e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0256 - - vra:106758971 361.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0256 4 5215380 5216312 Vra4g0256 4 5215380 5216312 ECH