Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0254 ATGTTGCAGAGAATGGGGAGAAAACTCATAGTCACGAGATTATCTTTTTACATTACACAGGACAAGCTGCAGAAGTTGTTCGCTCCGTTCGGACAAGTTGCTAGTGTTAATCTCGTGTTGGATCCTAGAACTAAAAGACCCAAAGGGTATGGGTTTGTCTCCTACAACACTGAAATTGAAGCGGAAAAGGCTCTGAAAGCCATGAATGGCAGGATTGTTGATGGAAGGCTGCTTTTGGTTGAACCTGCCCGCGATAAATGA 261 0.4406 MLQRMGRKLIVTRLSFYITQDKLQKLFAPFGQVASVNLVLDPRTKRPKGYGFVSYNTEIEAEKALKAMNGRIVDGRLLLVEPARDK* 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0254 86 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 6 81 - -
Vra4g0254 86 Gene3D - 3 86 IPR012677 -
Vra4g0254 86 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Vra4g0254 86 SUPERFAMILY RNA-binding domain, RBD 6 86 IPR035979 GO:0003676
Vra4g0254 86 SMART rrm1_1 8 81 IPR000504 GO:0003723
Vra4g0254 86 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN 6 81 - -
Vra4g0254 86 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0254 Vra-Chr4 5200630 5203279 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0254 6 86 Eukaryotic Initiation Factors Gene Family AT2G23350 39.506 5.86e-12 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0254 K13195 - gmx:100781760 123.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0254 4 5200630 5203279 Vra4g0254 4 5200630 5203279 ECH