Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0253 ATGTCTGCTGCTCTGGATATGACGCTCGACGATATTATCAAGAACAACAAGAAGTCTGCCTCCGCCAACACCAGGGGCCGAGGCCGAGCTTCGGGACCCGGACCTGCTCGCCGTCTACCCAACCGGGCCGCAAATCGCGCCGCGCCGTACGCCACCGCTAAGGCGCCGGAGTCTGCGTGGCAGCACGATATGTACGCCGATCAGCCAGCCGCCGCGGCTTTCGCAGGTCAAGGTGGTCGGGCGTCTTCCATCGAAACAGGGACGAAGCTTTACATATCTAATCTGGATTATGGCGTTTCTAATGACGATATTAAGGAGTTATTTCTTGAAGTTGGTGACCTGAAACGGCATACTGTTCACTACGATAGGAGTGGAAGATCCAAGGGTACGGCAGAAGTAGTCTTCTCTCGACGTGCTGATGCTGTAGCTGCGGTGAAGAGGTACCACAATGTTCAGCTAGACGGGAAACCAATGAAGGTAGAGATTGTGGGAACAAATATCGCCACACATACTGCAGCGCCCACTGTTAATGGGACTTTTGGAAATCCTGGTGGACCTCCCAGAAGTGGACAAGGGAGAAATGGGCCACTAGGAAGGCCGCGTGGTGCACCTAGAGGGCGAGGTGGCAGTCGGAGGGGTAGAGGACGTGGTAGAGGTCGTGATGAAAAGGTATCTGCTGAAGATCTCGATGCTGAGTTGGAGAAGTATCATGCTGAGGCTATGCAATTGAACTGA 735 0.5401 MSAALDMTLDDIIKNNKKSASANTRGRGRASGPGPARRLPNRAANRAAPYATAKAPESAWQHDMYADQPAAAAFAGQGGRASSIETGTKLYISNLDYGVSNDDIKELFLEVGDLKRHTVHYDRSGRSKGTAEVVFSRRADAVAAVKRYHNVQLDGKPMKVEIVGTNIATHTAAPTVNGTFGNPGGPPRSGQGRNGPLGRPRGAPRGRGGSRRGRGRGRGRDEKVSAEDLDAELEKYHAEAMQLN* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0253 244 MobiDBLite consensus disorder prediction 215 237 - -
Vra4g0253 244 Pfam C-terminal duplication domain of Friend of PRMT1 185 238 IPR025715 -
Vra4g0253 244 PANTHER CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED 1 243 - -
Vra4g0253 244 MobiDBLite consensus disorder prediction 173 244 - -
Vra4g0253 244 SMART rrm1_1 89 161 IPR000504 GO:0003723
Vra4g0253 244 MobiDBLite consensus disorder prediction 16 53 - -
Vra4g0253 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 165 IPR000504 GO:0003723
Vra4g0253 244 SUPERFAMILY RNA-binding domain, RBD 82 162 IPR035979 GO:0003676
Vra4g0253 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 158 IPR000504 GO:0003723
Vra4g0253 244 Gene3D - 70 227 IPR012677 -
Vra4g0253 244 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 243 - -
Vra4g0253 244 SMART FoP_duplication_2 176 244 IPR025715 -
Vra4g0253 244 CDD RRM_THOC4 88 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0253 Vra-Chr4 5182847 5186447 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0253 87 162 Eukaryotic Initiation Factors Gene Family AT2G23350 35.526 1.94e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0253 K12881 - gmx:100783362 338.961