Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0245 ATGGGGAGTCGCTCTGCAATTAGAAGAGAATCAAGTAGAACTCATTCAGTTTCTCGGTGGAGTCCTACAAGAGAGCAAATAGCAATGTTGGAGGACCTCTACAGACAGGGAATGCGGACTCCAAATGCTGAGCAGATACAAGAGGTTACCTCCAGATTAAGGGCATATGGTCACATCCAAGGAAAAAATGTCTTTTACTGGTTTCAGAATCACAAAGCACGTCAAAGACAGAAGCAGAAGCTAGAAAGCATTGCACATTCCAATAGCTTTCTTCCAGTCTCACACCCCATTTGCCAAAATGTTGTCTGTGCTCCATTTTATTCTCAACAAAGTGGAATGAACTTTTATCCTCAACCAGAAAAGGTAGTTGCAGCTGGAGGTATTGTTGGGACAGTTGTACCATTTGGGATGCTGAAAATTTGTGATGGCCAGCAGATATACCAACAATTGCGACAGAGGGTACAACCTGATTATAACATAAATGACAAAAAAACCTTAACCCTCTTTCCTCTTCATCCAACAGGCATTTTGAAAGAAAAAACTGCTAATCAAGGGTCTTCACATGCTTCAGCTTCTGGTTCTCACTGA 588 0.4184 MGSRSAIRRESSRTHSVSRWSPTREQIAMLEDLYRQGMRTPNAEQIQEVTSRLRAYGHIQGKNVFYWFQNHKARQRQKQKLESIAHSNSFLPVSHPICQNVVCAPFYSQQSGMNFYPQPEKVVAAGGIVGTVVPFGMLKICDGQQIYQQLRQRVQPDYNINDKKTLTLFPLHPTGILKEKTANQGSSHASASGSH* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0245 195 PANTHER TRANSCRIPTION FACTOR HOMOBOX-WOX FAMILY-RELATED 8 187 - -
Vra4g0245 195 SMART HOX_1 15 82 IPR001356 GO:0003677
Vra4g0245 195 ProSiteProfiles 'Homeobox' domain profile. 13 78 IPR001356 GO:0003677
Vra4g0245 195 Gene3D - 18 83 - -
Vra4g0245 195 MobiDBLite consensus disorder prediction 1 21 - -
Vra4g0245 195 SUPERFAMILY Homeodomain-like 13 85 IPR009057 -
Vra4g0245 195 CDD homeodomain 19 79 IPR001356 GO:0003677
Vra4g0245 195 Pfam Homeodomain 18 77 IPR001356 GO:0003677
Vra4g0245 195 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 8 187 IPR044555 GO:0003700|GO:0099402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0245 Vra-Chr4 5141019 5142011 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0245 14 194 Wox Gene Family AT5G59340 40.826 6.56e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vra4g0245 Homeodomain 1.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0245 - - var:108332933 348.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0245 4 5141019 5142011 Vra4g0245 4 5141019 5142011 ECH