Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0239 ATGGAACTTTTGAAACCTCTGCACCCTCACCATGCACCCATTTTGTGCCTTCCCTTCCACGGCCACCCCTCTTCTTCCCAATCTCAATCACAGCTTCCCCTCCCCATGCCTCCCAAGGTTCATGTAGCTGTTGGAAAATCGATTGATAAAGCTGTTACCTTGCTCCAATGGACCTTTAAGCACTTTCAGAACTCTGAAATCGTTATATTACATGCTTATCAACCTTCTCTCACGATCCCCACTCTCTTGGGGAAATTGCCTGCATCACAGGCTAGTCCTGCTGTGGTGTCTGCTTTTCGAAGTGTGGAGAGAGAACAGACCATGAAGCTTTTAGACAAGTACTTGACCGTTTGCCGCACAGCTAGGGTTAAGGCAAGCGTTATAGTAACAGAAGTTGATCAAGTCCAAAAGGGAATTGTTGATTTGGTCGTTAAGCATAATATTCAGAAGCTTGTCATTGGAGCGGTGCCAGAAAATTGCATGAAAGTGAAAAGAAATTCTGGTAAAGCAAATTACACTGCCAAAAATGCTCCTCCTTTCTGTGAAGTATGGTTTATCTATAAAGGAAAAGTCATCTGGACAAGAGAGGCTTCTGAAACACCATGTTCTTCATCCTTGTCCACTCAACCTGAGATTGCCACCGCAGAAAGCTTGAGATGTAGATCTTTTCAATATGGTAAGAATGAATTATTTGACTCGGAGTGTCTTCAACCAAATTCGGCAAGATCTGCCACTGGTTTTGGAATTGGAAGTTGGGTTCATGGGGAAATCACTGAAACTGGAGCCACTTTTTCATCCAAAGCATCCAGTTGTAGCAGTCATTGTTCCTCTCAAAATTCTTCTCGTGCTCATTTAGATACATACTTAGAGGCCATGGAAGAAAAAATTAACAACCAACTTATTGAAACCAAGAGAGAAGCCGAGGCAGTAGCAGATGAAGCCTCTGCAGAGCTATTAAAGTGTGAGAGGTTAGAAGTTGAAGCCATGGAAGCCATCAGGAAGGTCAATTTGTTTGACTCTGCCCGTGTTCGTGAAGTAAAGCTTAGAAAAGAGGCTGAGGATGCACTCAGAGCTACTGTAGAAGAACAACAAAAGCTCTTGAGTGAGAGTGAAAAAATTGCTAACGAGCTTCAAATGACCATGAGAAATATTGCGCTGTTAGATAGTCGTGCTCAGGAAGCAAATCGTAGACGTGATGAAGCTGCAGATGAACTATCACTAATTCAGGAATCCATCTCAACCCTGTGGCAAGAAAGGCAGCAGATAAGGAGACACAAAATGGAATCCCTACGTTGGCTTGAGCGGTGGAGAAGTCGAGGACAGGTTGGAGCAGCTCATTGCAATGGGGTCATTGGCTTTCCTGAAGAATTACCTGAGTTAGCTGAGTTTTCATCATCAGATCTTCAAAATGCCACATGTAATTTTTCCAACAGCTTTAAAATTGTGCAAGGTGGATTTGGTTGTATATACAAGGGGGAAATGATGGGTAGGACTGTTACTATAAAAAGGTTCCATCAACATAATATGCAAGGACCAATGGAGTTTCGTCAAGAGGTTCAAGTTCTTGGTAGTCTCCAGCACCCTCATTTAATCACATTGCTTGGTGTTTGCCCTGAAGCCTGGTCAATTGTATATGAGTACCTCCCCAATGGAACTCTTCAAGACTACCTATTCCGGAAAAGCAACAATTCTCCTTTAACATGGAATACCCGAGCACGAATGATTGCTGAAATCGCTAGTGCTCTCTGCTTCCTACATTCTTTTAAACCCGAAACTATTATCCATGGTGATCTGAAGCCAGAAACTGTACTACTTGATTCTTCACTTCGATGCAAGATATGCGGATTTGGATTCTGCAGTCTGGTAAGTGAGGAGTCTCTCCTCCGTCCTAGCTTCCGTTTGAGCACTGAACCAAAGGGTGCTTTCACATATACTGATCCAGAGTTTCATAGAACTGGAATACTAACAACAAAGTCTGACATATACTCCTTTGGGCTCATCATTTTACAACTCCTCACTGGTAATACTCCAGTTGGATTAGCAACTCTAGTACGCAATGCAGCTTCATGTGGAAAATTGTCTTCAATTCTTGATTCTTCAGCTGGAGAATGGCCCTCGCCTGTGGCATCGCGTTTGGTCGAACTAGGATTGCAATTCTGTCAACAAAATCGTAGAGACAGACCAGATTTAACGCCTACACTAGTGAGAGAATTGGAGCAGATGCATGCTTCAGAAGAGCGACCAGTGCCGTCTTTCTTCTTATGTCCAATCCTTCAGGAAATAATGCATGATCCTCAAGTTGCAGCAGACGGATTTACCTATGAAGGAGATGCCTTACGTGAATGGTTGGAAAATGGGCACGACACTTCTCCCATGACTAATCTGAAATTGAATCACCTATTTCTTACTCCCAACCACGCACTTCGACTTGCCATCCAAGACTGGCTTTGCAAATCTTGA 2460 0.4325 MELLKPLHPHHAPILCLPFHGHPSSSQSQSQLPLPMPPKVHVAVGKSIDKAVTLLQWTFKHFQNSEIVILHAYQPSLTIPTLLGKLPASQASPAVVSAFRSVEREQTMKLLDKYLTVCRTARVKASVIVTEVDQVQKGIVDLVVKHNIQKLVIGAVPENCMKVKRNSGKANYTAKNAPPFCEVWFIYKGKVIWTREASETPCSSSLSTQPEIATAESLRCRSFQYGKNELFDSECLQPNSARSATGFGIGSWVHGEITETGATFSSKASSCSSHCSSQNSSRAHLDTYLEAMEEKINNQLIETKREAEAVADEASAELLKCERLEVEAMEAIRKVNLFDSARVREVKLRKEAEDALRATVEEQQKLLSESEKIANELQMTMRNIALLDSRAQEANRRRDEAADELSLIQESISTLWQERQQIRRHKMESLRWLERWRSRGQVGAAHCNGVIGFPEELPELAEFSSSDLQNATCNFSNSFKIVQGGFGCIYKGEMMGRTVTIKRFHQHNMQGPMEFRQEVQVLGSLQHPHLITLLGVCPEAWSIVYEYLPNGTLQDYLFRKSNNSPLTWNTRARMIAEIASALCFLHSFKPETIIHGDLKPETVLLDSSLRCKICGFGFCSLVSEESLLRPSFRLSTEPKGAFTYTDPEFHRTGILTTKSDIYSFGLIILQLLTGNTPVGLATLVRNAASCGKLSSILDSSAGEWPSPVASRLVELGLQFCQQNRRDRPDLTPTLVRELEQMHASEERPVPSFFLCPILQEIMHDPQVAADGFTYEGDALREWLENGHDTSPMTNLKLNHLFLTPNHALRLAIQDWLCKS* 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0239 819 Pfam Protein tyrosine and serine/threonine kinase 480 731 IPR001245 GO:0004672|GO:0006468
Vra4g0239 819 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 750 819 IPR013083 -
Vra4g0239 819 Coils Coil 349 411 - -
Vra4g0239 819 SUPERFAMILY Protein kinase-like (PK-like) 458 737 IPR011009 -
Vra4g0239 819 Coils Coil 293 324 - -
Vra4g0239 819 CDD STK_N 39 189 - -
Vra4g0239 819 ProSiteProfiles Protein kinase domain profile. 475 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0239 819 SMART Ubox_2 752 815 IPR003613 GO:0004842|GO:0016567
Vra4g0239 819 CDD RING-Ubox_WDSUB1_like 753 794 - -
Vra4g0239 819 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 38 157 - -
Vra4g0239 819 ProSiteProfiles U-box domain profile. 748 819 IPR003613 GO:0004842|GO:0016567
Vra4g0239 819 SUPERFAMILY RING/U-box 739 818 - -
Vra4g0239 819 Pfam U-box domain 749 818 IPR003613 GO:0004842|GO:0016567
Vra4g0239 819 PANTHER OS10G0100500 PROTEIN 28 818 - -
Vra4g0239 819 Gene3D Transferase(Phosphotransferase) domain 1 548 749 - -
Vra4g0239 819 Gene3D HUPs 37 156 IPR014729 -
Vra4g0239 819 Gene3D Phosphorylase Kinase; domain 1 453 547 - -
Vra4g0239 819 PANTHER OS02G0152300 PROTEIN 28 818 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0239 Vra-Chr4 5068299 5072560 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0239 39 816 U-box Gene Family AT2G45910 35.670 1.56e-166 502
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vra4g0239 PK_Tyr_Ser-Thr 5.1e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0239 - - gmx:100788846 1418.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0239 4 5068299 5072560 Vra4g0239 4 5068299 5072560 ECH
Vra4g0239 4 5068299 5072560 Vra2g0606 2 4769366 4774225 PCT