Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0233 ATGGGAGTTTGTTTGAGCGCCCAAATTAAAGCTGAAAGCCCGTATAATACTGGGTTCAATTCAAAGTATGTGAGTACAGATGGAAATTATCTTGGCAGCACAAACGATAAGGTTTCAGGAAACTCGGTCCCTCTGACTCCTCGGAGTGAGGGTGAGATCTTGCAGTCATCCAATTTGAAGAGCTTTACCTTATCAGAACTTAAGACGGCCACTAGGAATTTCCGTCCAGACAGTGTGTTAGGAGAAGGTGGTTTTGGATCAGTTTTTAAAGGGTGGATTGATGAGAATTCGTTAACTGCTACAAAACCTGGCACTGGTATTGTTATTGCTGTGAAAAGACTTAATCAAGATGGCATCCAGGGTCACAGGGAGTGGTTGGCTGAAGTCAACTATCTTGGACAGCTTTCTCATCCTCATCTAGTGAGATTGATTGGGTTTTGCCTGGAAGATGAACACCGCCTTCTCGTCTATGAATTTATGCCTCGTGGAAGCTTGGAAAACCATTTGTTCAGGAGAGGTTCATATTTTCAGCCACTCTCTTGGAGCCTTCGTTTGAAAGTTGCTCTTGATGCTGCCAAAGGGCTTGCCTTTCTACACAGTGCTGAAACAAAAGTGATATATAGAGATTTTAAGACTTCAAATATATTGCTGGATTCGAATTACAATGCAAAACTTTCTGATTTTGGGCTGGCAAAGGATGGACCAACGGGTGACAAAAGCCATGTCTCCACCAGGGTAATGGGAACCTACGGATATGCAGCTCCTGAATATCTAGCCACAGGTCATCTTACTGCCAAGAGTGATGTCTATAGTTTTGGAGTTGTCCTGCTAGAAATGTTATCTGGAAAGAGGGCAGTTGACAAGAATAGACCATCTGGACAACACAATTTGGTGGAATGGGCTAAACCATACCTGGCAAACAAACGTAAAATATTTCGTGTGTTGGACACACGGCTTGAAGGACAATATTCAACGGATGATGCCTATAAAGTGGCCAACCTTGGCTTGCGGTGCCTGTCAATAGATTCCAAGTTCAGGCCAAACATGGATGAAGTGGTGAGAACATTGGAGCAGCTGCAGGTTCCTAATGCAAATGGAGGCAATCAAAATCCTTCTCGTGTTAGAAGAAGAAGTGCTGATGTAAGTAGAGGGTATCAAAATCCTTCTGTTAATGGATCTCGAGTTCGTAGAAGAAGTGCTGATGACATTAGCCGCATGGAGACTCCCTCTGCTTATCCCAGGCCCTCTGCATCCCCTCTCTATACATAA 1269 0.4381 MGVCLSAQIKAESPYNTGFNSKYVSTDGNYLGSTNDKVSGNSVPLTPRSEGEILQSSNLKSFTLSELKTATRNFRPDSVLGEGGFGSVFKGWIDENSLTATKPGTGIVIAVKRLNQDGIQGHREWLAEVNYLGQLSHPHLVRLIGFCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWSLRLKVALDAAKGLAFLHSAETKVIYRDFKTSNILLDSNYNAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYLATGHLTAKSDVYSFGVVLLEMLSGKRAVDKNRPSGQHNLVEWAKPYLANKRKIFRVLDTRLEGQYSTDDAYKVANLGLRCLSIDSKFRPNMDEVVRTLEQLQVPNANGGNQNPSRVRRRSADVSRGYQNPSVNGSRVRRRSADDISRMETPSAYPRPSASPLYT* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0233 422 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL11-RELATED 26 375 - -
Vra4g0233 422 Gene3D Phosphorylase Kinase; domain 1 49 159 - -
Vra4g0233 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Vra4g0233 422 CDD STKc_IRAK 80 359 - -
Vra4g0233 422 PANTHER OS01G0588500 PROTEIN-RELATED 26 375 - -
Vra4g0233 422 MobiDBLite consensus disorder prediction 360 422 - -
Vra4g0233 422 Pfam Protein tyrosine and serine/threonine kinase 78 356 IPR001245 GO:0004672|GO:0006468
Vra4g0233 422 SUPERFAMILY Protein kinase-like (PK-like) 49 356 IPR011009 -
Vra4g0233 422 Gene3D Transferase(Phosphotransferase) domain 1 160 379 - -
Vra4g0233 422 ProSitePatterns Protein kinases ATP-binding region signature. 80 112 IPR017441 GO:0005524
Vra4g0233 422 MobiDBLite consensus disorder prediction 360 375 - -
Vra4g0233 422 ProSiteProfiles Protein kinase domain profile. 74 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0233 Vra-Chr4 5020541 5023711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0233 52 356 Glycoside Hydrolase AT3G07070 49.020 7.37e-102 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vra4g0233 PK_Tyr_Ser-Thr 3.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0233 - - gmx:100798404 799.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0233 4 5020541 5023711 Vra4g0233 4 5020541 5023711 ECH
Vra4g0233 4 5020541 5023711 Vra2g0602 2 4732567 4735444 PCT