Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0230 ATGGCTCTGCTAACTGTAGCACTGTACCTTGCGTCCATAATGTGGATGGTGGAAGCTCGAATTCCAGGCGTTTATACCGGCGGCGCGTGGCAAACTGCTCACGCCACCTTCTACGGAGGATCCGATGCATCCGGCACCATGGGGGGAGCTTGCGGGTATGGAAACCTGTACAGCCAAGGGTACGGAGTTAACACGGCGGCGTTGAGCACGGCACTGTTCAACAACGGCCTGAGCTGCGGGGCGTGTTTTGAGATAAAATGCGCAAACGACAAGCAGTGGTGTCACTCCGGAAGCCCTTCCATCTTCATCACTGCCACCAACTTCTGTCCCCCAAACTACGCTCTTCCTAACGACAATGGGGGCTGGTGCAACCCCCCTCGCCCTCACTTCGACCTGGCCATGCCCATGTTCCTCAAAATCGCGGAATATCGCGCCGGCATCGTACCTGTCGCCTACCGCAGGGTGCCATGTATGAAGCATGGAGGAATGAGGTTCACGATCAATGGCTTCCGTTACTTCAACTTGGTGCTGATCAGCAACGTGGCGGGTGCAGGGGATCTGGTGCACACCTACGTTAAAGGGTCGCGAACCGGTTGGATGCCAATGAGCCGGAACTGGGGTCAAAACTGGCAGTCAAACGCGGTTCTTGTGGGACAAGCTTTGTCCTTCAGAGTCACCGCCAGCGACCGGCGCTCTTCCACCTCGTGGAACATTGCTCCGCCACATTGGCAATTTGGTCAAACTTTCACCGGAAAAAACTTCCGTGTCTGA 771 0.5603 MALLTVALYLASIMWMVEARIPGVYTGGAWQTAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDKQWCHSGSPSIFITATNFCPPNYALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCMKHGGMRFTINGFRYFNLVLISNVAGAGDLVHTYVKGSRTGWMPMSRNWGQNWQSNAVLVGQALSFRVTASDRRSSTSWNIAPPHWQFGQTFTGKNFRV* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0230 256 SUPERFAMILY Barwin-like endoglucanases 29 180 IPR036908 -
Vra4g0230 256 Pfam Lytic transglycolase 65 152 IPR009009 -
Vra4g0230 256 Gene3D - 18 157 IPR036908 -
Vra4g0230 256 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 251 IPR007117 -
Vra4g0230 256 PANTHER EXPANSIN-A15 4 255 IPR002963 GO:0009664
Vra4g0230 256 Gene3D - 163 254 IPR036749 -
Vra4g0230 256 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Vra4g0230 256 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Vra4g0230 256 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Vra4g0230 256 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Vra4g0230 256 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Vra4g0230 256 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Vra4g0230 256 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Vra4g0230 256 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Vra4g0230 256 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Vra4g0230 256 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Vra4g0230 256 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Vra4g0230 256 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Vra4g0230 256 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Vra4g0230 256 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Vra4g0230 256 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Vra4g0230 256 PANTHER EXPANSIN 4 255 - -
Vra4g0230 256 Pfam Expansin C-terminal domain 163 240 IPR007117 -
Vra4g0230 256 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 162 IPR007112 -
Vra4g0230 256 SUPERFAMILY PHL pollen allergen 159 251 IPR036749 -
Vra4g0230 256 SMART dpbb_1 65 152 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0230 Vra-Chr4 4998691 5000178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0230 1 256 Expansin Gene Family AT2G39700 80.934 3.27e-160 443
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0230 - - gmx:100791522 510.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0230 4 4998691 5000178 Vra4g0230 4 4998691 5000178 ECH
Vra4g0230 4 4998691 5000178 Vra6g0683 6 6485547 6487582 ECH
Vra4g0230 4 4998691 5000178 Vra2g0599 2 4713931 4715489 ECH
Vra4g0230 4 4998691 5000178 Vra2g0599 2 4713931 4715489 PCT