Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0224 ATGGATAGAAGAGTCTCCTCCACCATCAATATTGCTAATGATGAAGCAGAATCTTTCTATGATGAGAGTGATGTCTCTGCTGTCCTTGGCTACATAAAGCAAATGCTGATGGAAGAGGACACAGAAGAAAAGTACAGTATGTTCCATGATTCCTTAGCTCTCCAACATACTGAGAGATCATTTTATCAGGTTATCACTCACCAGAAATCTTCTTCCCCTTCTTCCACACACCATCATCATCATCATCATGTTCACAGTAACCCCAGTTCCAGAGTAGAGAGCCCTGAGCAAAATGTCTCTGGTTGCTCCAGTGATAATAGTACTGGTAGTTCTGGCAGTACATCCATCTCCTCTGATTCTCAGTGGAGTGTTGACTATAACACCCCCACACTGCCAAACACTTTTACCTTTCCTGATAACTTTGCTTTCCACTCAAATTCAACCTCCACCACTCAATCTTCCACGAATACTGGATTTGGATTCTTAGATAATACCCTTCTTGATTCTGCATTTCAAGAGCAATTCAAGAGAGGTCTAGAGCAAGGTACCAGCTTCCTTCCTAAACATACTCCGTTCATTGTTGACACGGACAGCACAGCCTTTTCAGCGGTTCCAACTGTGGTAATTAAGACAGAAACAGAAGAAAGTGTTGAAGAGGAGCATTTTCTGTCTGTGTCAAGAAGGAGAAATCGGGACCAGGAAGAGTATGAAGCAGATGGGAGAATCAGGAAGACATCAGCAACGTACGTGGATGAAAGTGAGCTATCTGAATTGCTTGATAAAGTGGTGCTAGGCACTGGTTTAGGAAAACGGGTGCCTTCTGACACAGCCCTTTACCAAAATGATGAAACATTATTATTAGCAAACATGTTTGGTGGGGAGGTCAGGAAAAGTGACGAGGAAGTTGTGGATCTGAGAGCACTATTGATGCTTTGTGCACAAGCTGTTGCTTCTGATAGTCCTTCATTTGCAAAGCAACTATTAAAGCAGATTAAGCAGCATTCTTCTCCAATAGGGAATGATACTCAGAGGCTTGCACATTACTTTGGAAACGCCCTTGAAGCATGCTTGGATGGAACCGGTTTCCAGGTTTATAGTGTTCTATCCTCCAAAAGAATCTCTGCCAAAGACATGGTAAAAGCTTACTGTGCATATGCTTCAGTGTGCCCGTTTGAAAAGATTACAATAATTTTTGCCAACAAATCAATTTGTTTTCAATCTGAGAATGCAGAAACTGTTCATGTCATAGACTTTGGTATCCGCTATGGCTTCAAGTGGCCTTCACTTATCAGCATCCTATCAAAACGTCCTGGTGGACCACCCAAGCTTCGCATCACGGGTATAGATCAGCCACAGCCAGGTTTCAGGCCAGAGGAAAGGGTGCTGGAGACGGGGCGTAGACTTGAACATTATTGCAAGCGTTTCAATGTTCCGTTCGAGTTCAATGCTATTGCAAGAAAATGGGACACCATCAGATTTGAGGACCTCAAGATAGAGAAAAACGAATTTGTGGCTGTGAACTGCATGTTTGAGTTGGAGCATCTACTTGACGAGTCTGTGGTGTTGGATAATCCAAGGGAAGCTGTTTTGAGGTTGATTAAGAAGGCAAATCCTGATATATTTGTGCACAGCATTGTCAACGGCTCCCATGATGTTCCATTCTTTGTGTCGCGGTTCCGAGAGGCTCTCTTCCACTACTCTGCACTGTTTAACATGCTTGAAACCAACATTGATCGTGAAGATCCTACGAGGTTGATGTTTGAGAAGGAGTTGTTTGGAAGGGAGATCATGAACATCATAGCTTGTGAAGGTTGTGAGAGGGTTGAGAGGCCACAAACATACAAGCAATGGCAGCTTCAAAACATGAGAATTGGGTTTCGGTTACTTCCTTTGGATCAACGAGTCATTGAAAGAATAAAGAACAGGTTGAGACAGGATGCGCACGACACTAATTTCATGCTTGAGGTGGATGGTGGTTGGGTGCTACAAGGTTGGAAGGGTCGAATTCTGCATGCTTCCTCTTGTTGGGTTCCGGCATAA 2040 0.4348 MDRRVSSTINIANDEAESFYDESDVSAVLGYIKQMLMEEDTEEKYSMFHDSLALQHTERSFYQVITHQKSSSPSSTHHHHHHHVHSNPSSRVESPEQNVSGCSSDNSTGSSGSTSISSDSQWSVDYNTPTLPNTFTFPDNFAFHSNSTSTTQSSTNTGFGFLDNTLLDSAFQEQFKRGLEQGTSFLPKHTPFIVDTDSTAFSAVPTVVIKTETEESVEEEHFLSVSRRRNRDQEEYEADGRIRKTSATYVDESELSELLDKVVLGTGLGKRVPSDTALYQNDETLLLANMFGGEVRKSDEEVVDLRALLMLCAQAVASDSPSFAKQLLKQIKQHSSPIGNDTQRLAHYFGNALEACLDGTGFQVYSVLSSKRISAKDMVKAYCAYASVCPFEKITIIFANKSICFQSENAETVHVIDFGIRYGFKWPSLISILSKRPGGPPKLRITGIDQPQPGFRPEERVLETGRRLEHYCKRFNVPFEFNAIARKWDTIRFEDLKIEKNEFVAVNCMFELEHLLDESVVLDNPREAVLRLIKKANPDIFVHSIVNGSHDVPFFVSRFREALFHYSALFNMLETNIDREDPTRLMFEKELFGREIMNIIACEGCERVERPQTYKQWQLQNMRIGFRLLPLDQRVIERIKNRLRQDAHDTNFMLEVDGGWVLQGWKGRILHASSCWVPA* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0224 679 MobiDBLite consensus disorder prediction 65 121 - -
Vra4g0224 679 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 16 678 - -
Vra4g0224 679 Pfam GRAS domain family 305 676 IPR005202 -
Vra4g0224 679 ProSiteProfiles GRAS family profile. 296 677 IPR005202 -
Vra4g0224 679 MobiDBLite consensus disorder prediction 90 121 - -
Vra4g0224 679 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 16 678 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0224 Vra-Chr4 4959044 4961570 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0224 28 679 GRAS Transcription Factor Family AT1G07530 46.418 0.0 599
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vra4g0224 GRAS 1.9e-108 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0224 - - gmx:100780343 857.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0224 4 4959044 4961570 Vra4g0224 4 4959044 4961570 ECH
Vra4g0224 4 4959044 4961570 Vra2g0592 2 4668989 4671940 PCT
Vra2g0591 2 4664054 4666997 Vra4g0224 4 4959044 4961570 PCT