Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0223 ATGGATCCAAACACTGTCATGAGCGGCTACGAGTTTGATGAGTGGGATTTCAATGGACACTACACGAACCTCCTCACGGATCCTTTTTTCTCTCAGTCCGATGTGGGCCCACCTGGGTTTTCTCCAAATACAATTTTAAACTCCGACCCGCTTGTTTCATCCTCCGCCGACTCCGCCGCTATGGTGGCTACCGTTGAGGAAGACACTGATTTTTCAGAAACCTTCAAGTTCATAAGTCAAATTCTAATGGAAGAGAACTTTGAACAGAAACCTTGCATGTGCTATGACCCTTTGACTCTTCAACACACTGAGAAATCATTCTATGATGCTTTGGAATTGGAACCGCCACTGCCTCTTTCCCCTAATCAGCACCCGCTTGAGAGCCCTGATGGCAATTCTTCCAATTCCACTACTGATTCAGCCAATTTTCACGACTTGAAGCCTTCTTCACCCAATACACCTGTTTCTGGTGGTGGTGAGGCTTTTCATTCCTCTACCCACGCGCCCTCTTTCTTTGTTCCTCCCTCTGCTTTGACTAAAATTAACGATGGAACCCTGGATATGGATTCTTCTGTGAGCAAGCTCTTGGCTGAAAATATTTTCAACGATGCAGAATCTATGTTGCAGTTTAGGAGAGGGTTGGAGGAGGCTAGTAAGTTTCTTCCTCAGAAACCTCAGCTTTTCACTGGGTTGGAGAGCGCCACGGTTTCTGCGGAACCAAAGGTAGGAGGGGAATTAACCGTTAAGCGTGAGAATTCAATAGGGGTGAAGAGTAGAAAGAATCACGCACGCCAAGATGAAGAAGAAGGAAGAAGCAACAAACATTCTGAGGTTTGTGTTGATGAGGAGAATGAAATATCTGATATATTTGATAAGGTATTGCTTAGTGTTGAAAATGTGCCACTTTGTGCTGGTAAGAATGTATCTGTGGCAGTGGGAGACAGTAACGCAAAGCTGAGTGAGCAATCACCTTCGGTGGATGTAGGGAAGGTCCGTTCCAAGAGGCAAGGGAAGAAGAAGGAAACAGTGGATTTGAGGACCCTTTTGGTTCTGTGTGCACAAGCTGCGTCTGCCAGTGACAACAGGACTGCTAATGAACTACTGAAGCAGATTAGGCAGCATTCTTCTGCTTTGGGTGATGCCTCACAAAGGTTGGCTCATTATGTGGCCAATGCTTTGGAGGCTCGCTTGGTTGGTGCCGGAACTGGAACACAGATATTTTATATGAGCTACAGGAACTTCACTACTACTGATTTCCTGAAAGCGTACCAAGTTTTCATATCTGCCTGCCCTTTCAAGAAATTTGCACATTTCTTTGCAAATAAAATGATTATGAAAACAGCAGAAAAGGCAGAAACTCTTCATATTATTGACTTTGGTATCTTGTATGGTTTCCAGTGGCCAATTCTTATCAAGTTTTTATCAAGTAGAACTGGAGGGCCTCCCAAGCTGCGCATCACAGGAATAGAGTATCCCCAACCAGGCTTTCGCCCATCCGAAAGAATCGAGGAGACTGGTCGTCGTCTAGCTAAGTATTGCAACCGATTCAATGTTCCCTTTGAGTACAAGGCCATACCATCAAGAAACTGGGAAACCATTCAAATTGAAGACCTTAAGATTGAGAGCAACGAGGTGCTTGCTGTGAACTGTCTGGTAAGGTTTAAGAATTTGCTTGATGAATCAATTGAAGTGAGCAGTCCCAGAAATGCTGTTCTGAAATTAATCAGGAAGATGAATCCGCATATTTTTGTTCAATCCGTGGTAAATGGATCTTATAATGCCCCTTTCTTTGTCACGCGCTTCCGGGAGGCACTGTTCCATTATTCTTCAATTTATGATATGTTTGATACTCTGGTATCCCGTGAAAATGAATGGAGGTTGATGCTTGAGAGAGAATTTTTGGGTCGGGAGATCATGAATGTTGTAGCATGTGAAGCTCTTGAAAGGGTTGAGAGGCCTGAAACATACAAACAATGGCAGGTTAGGAATACTAGAGCTGGTTTTAGGCAGTTACCACTGGACAAGGAGTTAATGGCCAAATTTAGGGACAAGTTAAGGGAATGGTACCACAAGGATTTTGTCTTTGATGAAGATGGCGGCTGGATGCTTCAAGGTTGGAAGGGTCGCATTTTGTATGCTTCATCTTGTTGGGTGCCGGCATAA 2163 0.442 MDPNTVMSGYEFDEWDFNGHYTNLLTDPFFSQSDVGPPGFSPNTILNSDPLVSSSADSAAMVATVEEDTDFSETFKFISQILMEENFEQKPCMCYDPLTLQHTEKSFYDALELEPPLPLSPNQHPLESPDGNSSNSTTDSANFHDLKPSSPNTPVSGGGEAFHSSTHAPSFFVPPSALTKINDGTLDMDSSVSKLLAENIFNDAESMLQFRRGLEEASKFLPQKPQLFTGLESATVSAEPKVGGELTVKRENSIGVKSRKNHARQDEEEGRSNKHSEVCVDEENEISDIFDKVLLSVENVPLCAGKNVSVAVGDSNAKLSEQSPSVDVGKVRSKRQGKKKETVDLRTLLVLCAQAASASDNRTANELLKQIRQHSSALGDASQRLAHYVANALEARLVGAGTGTQIFYMSYRNFTTTDFLKAYQVFISACPFKKFAHFFANKMIMKTAEKAETLHIIDFGILYGFQWPILIKFLSSRTGGPPKLRITGIEYPQPGFRPSERIEETGRRLAKYCNRFNVPFEYKAIPSRNWETIQIEDLKIESNEVLAVNCLVRFKNLLDESIEVSSPRNAVLKLIRKMNPHIFVQSVVNGSYNAPFFVTRFREALFHYSSIYDMFDTLVSRENEWRLMLEREFLGREIMNVVACEALERVERPETYKQWQVRNTRAGFRQLPLDKELMAKFRDKLREWYHKDFVFDEDGGWMLQGWKGRILYASSCWVPA* 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0223 720 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 43 719 IPR005202 -
Vra4g0223 720 MobiDBLite consensus disorder prediction 125 160 - -
Vra4g0223 720 Pfam GRAS domain family 345 717 IPR005202 -
Vra4g0223 720 MobiDBLite consensus disorder prediction 114 167 - -
Vra4g0223 720 MobiDBLite consensus disorder prediction 253 276 - -
Vra4g0223 720 ProSiteProfiles GRAS family profile. 336 718 IPR005202 -
Vra4g0223 720 PANTHER SCARECROW-LIKE PROTEIN 34 43 719 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0223 Vra-Chr4 4945275 4948087 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0223 74 720 GRAS Transcription Factor Family AT1G07530 50.290 0.0 626
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vra4g0223 GRAS 3.9e-113 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0223 - - aprc:113855970 1056.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0223 4 4945275 4948087 Vra4g0223 4 4945275 4948087 ECH
Vra4g0223 4 4945275 4948087 Vra2g0592 2 4668989 4671940 ECH
Vra4g0223 4 4945275 4948087 Vra2g0591 2 4664054 4666997 PCT
Vra2g0590 2 4656342 4661577 Vra4g0223 4 4945275 4948087 PCT