Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0222 ATGCTTTCCACCAACTCTCTTGTGCAAAATTTTGGGGGTACTATCTCTGTGTTTTCGGATCAGAACCAAGTGACGGAGGGGATTGAGTTAGATGATTCATCTTCTTCTTCTGGTACAAGCTCAAGTGGAGAATCGACAAAGTACTCCAACAACATCCTTAGATACATAAGCGACATCCTCATGGACGAGGAAGACGACCTGTTAAACAAACCTTGCATGTTGCAGGAATGTTTGAGACTCCAGGCTGCTGAAAAATCATTCCTTGATGTCCTTGTCCATGACAGCCACCCTTCTTTCAGTGGTGAAAGCATTGGCATCGCAGATTCTGATGAAAATTTTGGTCGCACTGTTAGTTTTGAGAGCAATGGCAGCTGCACCACTGATAATTCATGTGACTCTGACTTTGTCAATGGCGTAGGTGAATTTGACTCTTCTTTCTTATCACAGCAAACCCATCTTGTTTATTCCCCAGATGTTGTTGATGCATTTATGGTTCGTGATGGAACCTGGAATCTCTTTCAGTCTCATAAGAAGCCGTTTATGGTGGAAGAGGGTCGTTCAACTTCAGCATCTAGAGAAAAGAGAAGCCATGAGCTGGATGATGATGCTGGTCTTGAACAAGATGGAAGAAGAGGCACCAAGGTTTCAGCTGTCTTTTCTGGCGAGTCAGAGTCACCAGAGATCTTAGATGAGGTGCTGCTTTTTCAAATTGGAAAAAGTGGATGTTCTTCTGAACCATCACAGGGTGTTGATTTAGGAGGGTCCAATGGAAAGGGAGGACGCTCACGTTCAAAGAAAGGGTCCAGCAAAGCAGGTACAGCCGTAGATTTATGGACCCTTCTAACTCAATGTGCACAAGCAGTGGCAAGCTTTGACCAAAGGAATGCAAATGACTTACTCGGCCAGATTAAGCAACACTCTTCACCCTTTGGGGATGGACTCCAGCGATTGGCTCATTACTTTGCCAAGGGCCTTGAGATAAGGTTGGCTGCTGGGACCCCATCATACGTGCCACTAGAAGTAGCAACTGCTGCTGATATGTTGAAAGCTTACGAACTATTTGTCACATCCTCTCCTTTGCAAAGGATGTCAAATTATTTGGCAACCAGGACAGTCATTAGTCTTGTGGAAAATGAGAGCAGTGTTCACATCATTGACTTTGGCATTTGCTATGGTTTTCAGTGGCCCTGCCTTATCAAAAGGCTGTCAGAAAGAGATGGTGGTCCTCCAAGGCTGCGTATAACAGGAATTGATCTTCCTCGGCCAGGATTTCGGCCTGCGGAAAGGGTTGAGGAGACAGGGCGGCGTTTGGCAAACTACTGCAAGAAGTTCAATGTCCCTTTTGAGTACAACTGCCTTGCACAGAAATGGGAGACTATAAAACTTGCAGATCTCAAGATAGACAGGAATGAAGTCACCGTTGTTAGCTGTTTCTACCGGCTGAAGAACCTGCCTGATGAAACTGTGGCAGTGAACAGTCCAAGAGATGCTGTGTTAAAGTTGATTAGGAAGATCAATCCAAACATTTTCATCCATGGGGTGGTCAATGGCACTTATAGTGCTCCTTTTTTCTTGACACGGTTCAGGGAAGCGCTGTACCACTTCTCATCACTGTTTGATATGTTTGAGGCTAATGTGCCACGTGAAGATTCGCAAAGGTTGATGTTTGAGAAAGGGTTGCTTGGAAGGGATGCCATCAATGTTATAGCGTGTGAGGGGGCAGAGAGAGTTGAGAGACCTGAGACTTACAAGCAGTGGCAGGTTAGGAACCTGAGAGCTGGGTTCAAACAAGTTAATTTTGATCCTCAGCTGGTGAATAATGCGAAACAAATGGTGAAGAAGGAATATCACAAAGATTTTGTGGTGGCTGAGGATGGGAAGTGGCTTTTGCAGGGATGGAAAGGGCGAATTCTGAATGCCATTTCTGCTTGGACTCCTGCTTGA 1944 0.4527 MLSTNSLVQNFGGTISVFSDQNQVTEGIELDDSSSSSGTSSSGESTKYSNNILRYISDILMDEEDDLLNKPCMLQECLRLQAAEKSFLDVLVHDSHPSFSGESIGIADSDENFGRTVSFESNGSCTTDNSCDSDFVNGVGEFDSSFLSQQTHLVYSPDVVDAFMVRDGTWNLFQSHKKPFMVEEGRSTSASREKRSHELDDDAGLEQDGRRGTKVSAVFSGESESPEILDEVLLFQIGKSGCSSEPSQGVDLGGSNGKGGRSRSKKGSSKAGTAVDLWTLLTQCAQAVASFDQRNANDLLGQIKQHSSPFGDGLQRLAHYFAKGLEIRLAAGTPSYVPLEVATAADMLKAYELFVTSSPLQRMSNYLATRTVISLVENESSVHIIDFGICYGFQWPCLIKRLSERDGGPPRLRITGIDLPRPGFRPAERVEETGRRLANYCKKFNVPFEYNCLAQKWETIKLADLKIDRNEVTVVSCFYRLKNLPDETVAVNSPRDAVLKLIRKINPNIFIHGVVNGTYSAPFFLTRFREALYHFSSLFDMFEANVPREDSQRLMFEKGLLGRDAINVIACEGAERVERPETYKQWQVRNLRAGFKQVNFDPQLVNNAKQMVKKEYHKDFVVAEDGKWLLQGWKGRILNAISAWTPA* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0222 647 MobiDBLite consensus disorder prediction 183 209 - -
Vra4g0222 647 Pfam GRAS domain family 279 645 IPR005202 -
Vra4g0222 647 ProSiteProfiles GRAS family profile. 268 645 IPR005202 -
Vra4g0222 647 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 14 646 IPR005202 -
Vra4g0222 647 MobiDBLite consensus disorder prediction 183 212 - -
Vra4g0222 647 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 14 646 - -
Vra4g0222 647 MobiDBLite consensus disorder prediction 242 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0222 Vra-Chr4 4935540 4937656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0222 52 647 GRAS Transcription Factor Family AT5G59450 44.224 1.24e-169 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vra4g0222 GRAS 9.8e-112 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0222 - - aprc:113855970 964.911
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0222 4 4935540 4937656 Vra4g0222 4 4935540 4937656 ECH
Vra4g0222 4 4935540 4937656 Vra2g0590 2 4656342 4661577 ECH
Vra4g0222 4 4935540 4937656 Vra2g0589 2 4649058 4651730 PCT