Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0213 ATGAGCTCCGACACGACGTCGTATTGGTGCTACAGCTGCACCCGCTTCGTTCACATCCAGGAGCACCACGACGTCCTTTGCCCTCGCTGCCAGGGCGGTTTCGTCGAGAAGGTTCAGGCCGGCCACTCGCCGGCAGTCTCCCTCATAGCTGATGGCGCCTCCAGAAGGCAGGGGTTTCGCCGCCGACGCCGCAACGCCGGGACTCACTCGCCGTTCAACCCGGTCATCGTGCTCCGGGGACCGGGGGAGGACGAGGAGAGCAGTTTTGAGTTATATTACGACGGCGACGACGGCGCGGGTCTCCGACCGCTGCCGTCGACGATGTCGGAGTTTTTGCTTGGATCGGGATTCGATCGGTTGCTGGAGCAGGTTTCGCAGATCGAGATCAACGGATTCGGGAGGACGGAGAATCCGCCGGCGTCCAAGGCGGCCATAGAGTCAATGCCGACTGTGCAAATCGCCGAGTCTCAGGTCGTGACAGAGACGCACTGCGCCGTTTGCAAAGAGGCCTTCGAGCTAGGCGCGTTGGCGCGTGAGATGCCGTGCAAGCACCTCTACCACTCCGATTGCATTCTCCCGTGGCTCTCGATGCGAAACTCGTGCCCGGTGTGCCGCCACGAGTTGCCGTCGGAGCAAGCGTCATCGGAGAGCAGAGTTTCGGGCCAGATCGAAGAGGAAGCGGTAGGGTTGACCATATGGAGGCTGCCTGGCGGCGGATTCGCCGTGGGTAGGTTCGCCGGCGAGAGCCACTTGCCGGTGGTGTACACGGAGATGGAGAGTGGCGAGAATTCGAGCGAAGGTTCAAGGAGAATCTCTCTGTCAGTAGGAAGCGGGAGAGTGAGGGAAAGTCGCGGTGGAATTGGCAGAATATTCCGGAATTGGTTTGGAAGAATTGGGGCTTTGACTAGAAGCCGTAGCCTTTCAACTTCGCTCTTCAATAGAAGAAGAAGTTCCAGGAGAACCTGGGTTTTGGAAGATTGA 981 0.5943 MSSDTTSYWCYSCTRFVHIQEHHDVLCPRCQGGFVEKVQAGHSPAVSLIADGASRRQGFRRRRRNAGTHSPFNPVIVLRGPGEDEESSFELYYDGDDGAGLRPLPSTMSEFLLGSGFDRLLEQVSQIEINGFGRTENPPASKAAIESMPTVQIAESQVVTETHCAVCKEAFELGALAREMPCKHLYHSDCILPWLSMRNSCPVCRHELPSEQASSESRVSGQIEEEAVGLTIWRLPGGGFAVGRFAGESHLPVVYTEMESGENSSEGSRRISLSVGSGRVRESRGGIGRIFRNWFGRIGALTRSRSLSTSLFNRRRSSRRTWVLED* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0213 326 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 4 285 - -
Vra4g0213 326 Pfam Protein of unknown function (DUF1117) 228 316 IPR010543 -
Vra4g0213 326 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Vra4g0213 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 211 IPR013083 -
Vra4g0213 326 PANTHER OS05G0110000 PROTEIN 4 285 - -
Vra4g0213 326 Pfam Ring finger domain 163 205 IPR001841 -
Vra4g0213 326 CDD RING-H2_RNF126_like 164 205 - -
Vra4g0213 326 ProSiteProfiles Zinc finger RING-type profile. 164 205 IPR001841 -
Vra4g0213 326 SUPERFAMILY RING/U-box 144 210 - -
Vra4g0213 326 SMART ring_2 164 204 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0213 Vra-Chr4 4856563 4858102 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0213 93 216 C3H Transcription Factor Family AT5G01980 41.129 3.19e-27 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0213 - K11982 vun:114185595 597.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0213 4 4856563 4858102 Vra2g0582 2 4614700 4616204 PCT