Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0211 ATGAGAGAACAAGGCTTTGGAGATAAGATGCATGGAATTATAACAACTCTCCCTCTCACTGCAAACACCTTCCTATATTGTGCCAACAATACTCGCTTTTCTCTCAGATCTTTTCAACCAAATTGTTGCATACCCACTTATAAAATTAGCTATGCAAGTCGTTTTCACCGTTCACAGTGTAAGCAGCAGAGAAAAGAAAGATGGGGCAATAGAATGATGGTGGTGAGAGCAAGGCGTGGCGAGTCGCCGTATGAAGTTTTGGGTGTGTCTCCATCAGCAACTGTTGACGAAATCAAAAGGGCATATCGGAAACTTGCTCTTAAGTATCATCCTGATGTCAATAAAGAGGAAAAGGCACAGGAGAAATTTATGAGGATAAAACATGCATACAATACATTGCTAAATTCCAGTTCCCGCAAAAGATATGATTCTGGAAATCAAGGTTACGATTTTTCTCAAGGAAGCCAAAGTAGGAATGCACAACCAGAAGAAGAATTTTATGGACTAGAGGAATTCTTTAAGGATCTTCAAGAAGAATTCAGGAACTGGGAAGCAAACGCTGCTTCAGAAGGAAAGCCAAAGAGCCTATGGGAGGAATTGTCGGAAATAGGAGAAGAATTTGTGGAGTTCCTTGAGAAAGAACTCAATATTACAGATCAGAATGGTGATTACGAGACACCTCAAGGAGAAAATGCATCCAACTTTTCTGGGAGAGAGACACCAAACAGTAGCAGTAATCCAGGTGAAGCTAGCAAGGGAAGCGTTGAGGATAACCTTGAGGAAATAGAAGCTACTCTGGCTCAGTTGAAAAAGGAATTAGGCTTGTAG 828 0.4106 MREQGFGDKMHGIITTLPLTANTFLYCANNTRFSLRSFQPNCCIPTYKISYASRFHRSQCKQQRKERWGNRMMVVRARRGESPYEVLGVSPSATVDEIKRAYRKLALKYHPDVNKEEKAQEKFMRIKHAYNTLLNSSSRKRYDSGNQGYDFSQGSQSRNAQPEEEFYGLEEFFKDLQEEFRNWEANAASEGKPKSLWEELSEIGEEFVEFLEKELNITDQNGDYETPQGENASNFSGRETPNSSSNPGEASKGSVEDNLEEIEATLAQLKKELGL* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0211 275 CDD DnaJ 83 135 IPR001623 -
Vra4g0211 275 Coils Coil 252 275 - -
Vra4g0211 275 MobiDBLite consensus disorder prediction 219 258 - -
Vra4g0211 275 MobiDBLite consensus disorder prediction 220 252 - -
Vra4g0211 275 Pfam DnaJ domain 83 143 IPR001623 -
Vra4g0211 275 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 56 273 - -
Vra4g0211 275 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 56 273 - -
Vra4g0211 275 MobiDBLite consensus disorder prediction 137 162 - -
Vra4g0211 275 ProSitePatterns Nt-dnaJ domain signature. 123 142 IPR018253 -
Vra4g0211 275 SUPERFAMILY Chaperone J-domain 51 142 IPR036869 -
Vra4g0211 275 SMART dnaj_3 81 138 IPR001623 -
Vra4g0211 275 Gene3D DnaJ domain 80 189 IPR036869 -
Vra4g0211 275 PRINTS DnaJ domain signature 84 102 IPR001623 -
Vra4g0211 275 PRINTS DnaJ domain signature 102 117 IPR001623 -
Vra4g0211 275 PRINTS DnaJ domain signature 118 138 IPR001623 -
Vra4g0211 275 ProSiteProfiles dnaJ domain profile. 82 146 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0211 Vra-Chr4 4847623 4850825 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0211 84 144 C2H2 Transcription Factor Family AT1G74250 41.791 4.51e-08 52.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0211 4 4847623 4850825 Vra4g0211 4 4847623 4850825 ECH