Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0202 ATGAATGAGGTTGCTAGTATCAGTAGAACTTCTCATGTTAATGTTGTCCAACTTCTTGGATTCTGTTTAGAAGGAAAGAAGAAAGCCCTTATTTATGAATTCATGCCTAATGATTCCCTGGACAAGTTTATCGGTAATAAGGGACTAGAAAGCACTTCATCCTTGAGTTGGGATAATCTGTTGCAAATTGCAAAAGGGATAGCTAGAGGACTAGAGTACCTGTTTGACATAAAACCACATAACATTCTTTTGGATGACAACTTCTGTCCCAAGATATCAGATTTGTCCTGGGAAAGAGAGCACTATTTCAGTTTCAGATGCGAGAGAAACAATAGGATATGTAGCTCCAGAAGTGTGCAACAAACATTTTGGTGGAGTTTCACAAAAATCTTATGTGTATATGATGCTACTAGAAATAGTGGGAGTGAGAATAATATTAATGATGAAGCTACTGAAACAAGTGAATACTTCCCAGATTGGATATACCGAAAGCTGGAGCAAGACCAAGATTTGAGAAGTGATGATGTGATAGGGACAAAAGAAAAAGAGACAGAAAGAAGAATGATTGCAGTTAGTTTCTGGTGCATTCAAACGTTTCCAAAGGATAGACCTACTCATAGTAGAGTAATAGAAATGTTAGAAGGCAACATGAATTCACAAGAAATTCCCCAAAACCTTCTTCTCCCACAATTGGATTGGTGTCAGAATGGACTACTAGTTCCTTGCGGTCTGAGCAGATGTTAA 744 0.3777 MNEVASISRTSHVNVVQLLGFCLEGKKKALIYEFMPNDSLDKFIGNKGLESTSSLSWDNLLQIAKGIARGLEYLFDIKPHNILLDDNFCPKISDLSWEREHYFSFRCERNNRICSSRSVQQTFWWSFTKILCVYDATRNSGSENNINDEATETSEYFPDWIYRKLEQDQDLRSDDVIGTKEKETERRMIAVSFWCIQTFPKDRPTHSRVIEMLEGNMNSQEIPQNLLLPQLDWCQNGLLVPCGLSRC* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0202 247 SMART tyrkin_6 1 213 IPR020635 GO:0004713|GO:0006468
Vra4g0202 247 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 228 IPR045874 GO:0004672
Vra4g0202 247 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 1 228 - -
Vra4g0202 247 SUPERFAMILY Protein kinase-like (PK-like) 1 227 IPR011009 -
Vra4g0202 247 Gene3D Phosphorylase Kinase; domain 1 1 35 - -
Vra4g0202 247 Gene3D Transferase(Phosphotransferase) domain 1 36 227 - -
Vra4g0202 247 ProSiteProfiles Protein kinase domain profile. 1 217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0202 247 Pfam Protein tyrosine and serine/threonine kinase 1 101 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0202 Vra-Chr4 4791174 4791917 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0202 1 231 Receptor kinase-like Gene Family AT1G66910 40.769 3.96e-55 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vra4g0202 PK_Tyr_Ser-Thr 4.3e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0202 - - vra:106758275 516.538