Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0198 ATGAGGAAGCCAGAACTGTGTAGTGGTAAAGACAGCAAGTTTAGAAAGGGATTGTGGTCACCAGAAGAAGATGAGAAACTCATCAACTACATGCTCAACAATGGACAAGGTTGTTGGAGCGACGTGGCAAGAAATGCTGGCCTCCAAAGATGTGGCAAAAGTTGTCGGCTACGATGGATCAATTACCTCAGGCCTGATCTTAAGAGAGGTGCATTCTCACCCCAAGAAGAGCAACTCATCATCCACTTCCATTCCTTTCTTGGAAACAGATGGTCTCAAATAGCGGCGCGTTTGCCTGGGAGAACCGACAATGAGATAAAAAACTTTTGGAATTCAACCATAAAGAAAAGACTCAAGAACATGTCTACGACCACAGCTTCAACCTCACCAAATTCTAGTGAGACCTCGTCTGAACCAAGTAATAAAGACCTCAACATGGGAGGGTTTATGCCTACACAACATCATCAGCATGCAACCTTTGTGCCTGTGTTTGGTTCATCTCAAACACAATCAATGCAAACAACAGTTTTCAACACAATGATCGAAAGGTTGGATCATGAACTAAACATGCCACACGTTGGTGAATACTTGGAAGGCACAGGGCCATGCTTTTCCCAAAATGAAGCTCACAACAAAAGTTCTTATTTAGATAACGGAGTGTTTGGGAGTGTAAATATTGGCGTTGAAGGGGATATGTTTGTTCCTCCCCTTGAGAATCTAAACACCAGCAACAATCATAACCTGAGTAGCACCTGCAAGAGAGAAACTAACAGCAGTTACTTTGATGACATAAATAGTATCCTTAACAACTGCAACATTGGCATATCTAGTGAGAATAAGGAAGAAGTGGAGAATTTGTTTCAGCAAGATGCAGAATGGGACTTTGAGGAGTTGATGAAAGATGTTTCCTCCTTTCCGTTTGTTGATTTTTCATTCTGA 939 0.4196 MRKPELCSGKDSKFRKGLWSPEEDEKLINYMLNNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEQLIIHFHSFLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNMSTTTASTSPNSSETSSEPSNKDLNMGGFMPTQHHQHATFVPVFGSSQTQSMQTTVFNTMIERLDHELNMPHVGEYLEGTGPCFSQNEAHNKSSYLDNGVFGSVNIGVEGDMFVPPLENLNTSNNHNLSSTCKRETNSSYFDDINSILNNCNIGISSENKEEVENLFQQDAEWDFEELMKDVSSFPFVDFSF* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0198 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Vra4g0198 312 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Vra4g0198 312 CDD SANT 71 111 IPR001005 -
Vra4g0198 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Vra4g0198 312 PANTHER MYB DOMAIN PROTEIN 55 10 311 - -
Vra4g0198 312 Gene3D - 16 68 - -
Vra4g0198 312 Gene3D - 70 144 - -
Vra4g0198 312 MobiDBLite consensus disorder prediction 120 142 - -
Vra4g0198 312 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Vra4g0198 312 PANTHER MYB TRANSCRIPTION FACTOR 10 311 - -
Vra4g0198 312 Pfam Myb-like DNA-binding domain 19 79 - -
Vra4g0198 312 CDD SANT 19 63 IPR001005 -
Vra4g0198 312 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Vra4g0198 312 SMART sant 15 65 IPR001005 -
Vra4g0198 312 SMART sant 68 116 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0198 Vra-Chr4 4760775 4762911 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0198 1 310 MYB Transcription Factor Family AT3G08500 45.115 3.55e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra4g0198 Myb_DNA-bind_6 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0198 K09422 - gmx:100799410 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0198 4 4760775 4762911 Vra4g0198 4 4760775 4762911 ECH
Vra4g0198 4 4760775 4762911 Vra2g0548 2 4333472 4336343 PCT