Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0197 ATGGAGTACTCTGTGGAATCTTTGGGAAGAGATCTTAAGAACGTGAGGAAGTACTTCGGGAGTGGAAAAACAAAGGAAGCATCATGGAGAGAATCACAGCTTAAAGGGTTGCACAGTTTTCTAGTTGAAAGAGAGCAAGAAATTTTGAATGCCCTCAAGCGTGATTTGGGGAAGCATTGCGTTGAGGCCTTCAGAGATGAGGTAGGAACGTTGGTGAAGACCTTAAACTGCGCCATAAAGCATTTGAAAAAATGGATGGCGGGGGAAGAGGCTAAATTGCCAAAAATAGCACTGCTTTCGAGTGCTGAGATAGTTCCTGAACCACTTGGTCTTGTTCTCATAATCTCATCATGGAACTTCCCTTTTGGACTGTCCTTGGAGCCACTGATAGGAGCAGTAGCTGCTGGAAACACTGCAGTTCTGAAGCCTTCAGAGATGTCCCCTACTTGCTCTTCTCTTTTAGCCACTGTCCTTCCAACTTACTTGGACAACAATGCCATTAAAGTCATCGAAGGTGGACCAGAAGTGGGAGAGCTACTCTTACAGCAAAGATGGGACAAGATTTTCTTCACAGGAAGTGCGAGGGTGGGAAGAATTGTTATGTCTGCTGCAGCTGTGCATCTTACTCCGGTGACTTTGGAGTTGGGTGGAAAATGTCCGGCACTGGTTGATTCTCTTACTTCTTCATGGGACAGAGAGGTGGCTGTGAAACGAGTTTCGGTGGCAAAATTCGGGGCTTGTGGAGGACAAGCATGCATAGCAGTCGATTATGTTCTTGTAGAGAAGAGTTTCAGTTCTACATTGGTGACATTGATGAAAGATTGTATTAAGAAAATGTTTGGAGAAAATCCTCAAGAGTCGAACACTGTTGCAAGGATAGTTAATGAGAAACATTTCATGAGACTCAAGAATCTTCTCACTGATCCAAGGGTGAAAGAGTCGGTGGTTTTTGGAGGTTCAATGAACGAAAATGACTTATTTATTGAACCCACAATATTGTTGGATCCCCCGCTTGATTCAGCAGTCATGGCTGAGGAAATCTTTGGCCCGGTGCTTCCAATTATCACTCTGGAGAAGATTGAAGACAGTGTCGAGTTCATAAGCTCAAGGCCTAAACCATTAGCAATTTATGCCTTCACGAAAAACCAAACTCTGCAGAGAAGAATGGTATCTGAAACATCATCCGGAAGTCTTGTTTTCAACGATGCAATTCTACAGTACATAGCGGATACCCTACCATTTGGAGGAATTGGGGAAAGTGGGTTTGGCAAGTACCATGGGAAGTTCTCCTTTGACGCGTTCAGTCACCCTAAGGTTGTGGCCAGAAGAAGTTACTTCACTGATTTTTGGTACAGATTTCCTCCATGGACTCTTAACAAGCTCCAACTACTTGAGGTGTCTTACAATTTGGATTATCTTGGAATACTTCTAGTTCTGCTTGGCTTAAAGAAGTCAAAACGCTCCTCATTTTAA 1473 0.4358 MEYSVESLGRDLKNVRKYFGSGKTKEASWRESQLKGLHSFLVEREQEILNALKRDLGKHCVEAFRDEVGTLVKTLNCAIKHLKKWMAGEEAKLPKIALLSSAEIVPEPLGLVLIISSWNFPFGLSLEPLIGAVAAGNTAVLKPSEMSPTCSSLLATVLPTYLDNNAIKVIEGGPEVGELLLQQRWDKIFFTGSARVGRIVMSAAAVHLTPVTLELGGKCPALVDSLTSSWDREVAVKRVSVAKFGACGGQACIAVDYVLVEKSFSSTLVTLMKDCIKKMFGENPQESNTVARIVNEKHFMRLKNLLTDPRVKESVVFGGSMNENDLFIEPTILLDPPLDSAVMAEEIFGPVLPIITLEKIEDSVEFISSRPKPLAIYAFTKNQTLQRRMVSETSSGSLVFNDAILQYIADTLPFGGIGESGFGKYHGKFSFDAFSHPKVVARRSYFTDFWYRFPPWTLNKLQLLEVSYNLDYLGILLVLLGLKKSKRSSF* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0197 490 Pfam Aldehyde dehydrogenase family 18 440 IPR015590 GO:0016491
Vra4g0197 490 PANTHER ALDEHYDE DEHYDROGENASE 6 490 IPR012394 GO:0006081
Vra4g0197 490 PIRSF ALDH 2 476 IPR012394 GO:0006081
Vra4g0197 490 SUPERFAMILY ALDH-like 13 457 IPR016161 GO:0016491
Vra4g0197 490 PANTHER ALDEHYDE DEHYDROGENASE 6 490 - -
Vra4g0197 490 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 16 438 IPR016162 GO:0016491
Vra4g0197 490 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 217 420 IPR016163 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0197 Vra-Chr4 4747896 4751170 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0197 1 484 Aldehyde Dehydrogenase Gene Family AT4G36250 53.719 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0197 K00128 - gmx:100798020 848.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0197 4 4747896 4751170 Vra4g0197 4 4747896 4751170 ECH