Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0196 ATGGCTGCAACTCCTTCCAAATGCAAATTGCGATCTCAATCTGATGCCAAATCATCGCCGGCTGTAACCCCAAGCACTCCACAAACCCTACATCTGCGCAGATCCCCACGCGCCAGGTCCCTCCTCTTCGATGCTACCAAATCTCCCAGTTCACCTTGTGAAATCTCCCTCACAACTCCCAAACGTAGAAATCAACGAATCAGCGATAATGTCGGGCATGATTCTGGCGAAGTCAAAGTCGCCACTAAAAAATCAGCTAAGATGAACGGTGCATCGAAGGAAAAGTATAGGAAGAGCTCAATTGAAGCTTCTCTCGCTCCGGTGACGCCGGCTTCTTCGGAGAAGACCTCAAAGAGGAAGAGGGAGGGTGAGAAGAAGGATGTGGTTACCAGAGCTAAAAGGGGGAAATTTGAGAATGAAAAAAGGAGTTCAAAATTGCCTGCGAGGCGCCAGTATTACAAAAAAGTGATTTTTGATGGGGGGGAGTTTGAAGTGGGGGATGACGTTTATGTCAAGAGGAGAGAAGATGCTGCTTCGGATGATGAAGATCCCGAGGTTGAGGTGTGTAGGATGTGTTTCATGACAAACAATGAGGTCCTGATTGAGTGTGACGATTGTTTGAATGGGTTTCATTTGAAATGTCTGAGGCCTCCATTGAAGGATGTTCCTGAAGGGGATTGGATATGTGGGTTCTGTGAGGCTCGGAGGATTGGTAAGGAGGTTCACCTTCCAAAGCCTCCGGTGGGTAAGAAAGTGGTTAGAACTTATAGGGAGAAACTTCTTTCCAGTGATTTGTGGGCTGCTCATATAGAAAGCATGTGGAAAGAGGTAGACGGCAACTATTGGTGTCGGGTGCGTTGGTATACAATCCCGGAAGAGACTTCTGTAGGGAGGCAGCCTCATAACCTGAGAAGGGAGCTATACCGAACTAACGAGTTTGCTGACATTGAGATGGAATCTGTCCTTAGACATTGCTTTGTTATGACCCCTAAAGAATATGCTAACGCCAGCAATGAGGGAGATGATGTTTTCTTATGTGAATATGAGTATGACATCAATTGGCATAGTTTCAAACGTCTTGCTGATATTGACAATGAAAGAGAGAATGGTGAAGAGACTGACAGTGATGAAGACTGGGGCCTTGACAAGGAATCAGATTCTGATACAGATGAAGATATTGGATATGAAGAAGAAAACACTAAAGATGGACTATCTCAGCCATCAAAAGGCCACCACCTAGCTGCAAATCTTCACAAGGGACGGTTCTTTGGACTTCAGAAGATAGGCACCAAAAGAATTCCACAGCATGTAAGGTCTCACAAACAGACCGATCTTGAGAGAGCAAAGGCTACACTGTTGTTGGCATCACTACCTAAATCTTTACCTTGTAGAAACAAAGAAATGGAGGAGATAACTACATTCATCAAAGGTGCTATTTCTGACAATCAATGTCTGGGAGGTTGCCTCTACATTCATGGAGTTCCCGGAACTGGCAAGACAATGAGTGTACTATCGGTGATGAGGAGCTTGAAGGCAGAAGTTGATGCTGGAAACATCAAGCCATACACATTTGTGGAGATTAACGGTTTGAAGTTGGCATCACCAGAAAATATTTATCGGGTCATATACGAGGCACTGAATGGACATAGGGTCAGCTGGAAAAAGGCTCTCCACTTGCTGAATGAGAGATTTGTAGAAGGAAAGAAAATCAGAGACGAGGCTGATCGACCATGTATTTTGCTTATTGATGAACTCGATCTTCTAGTAACCAGAAACCAATCGGTTCTGTATAATATTCTTGACTGGCCTACTAAGCCACATTCCAAACTAATAGTCATAGGGATAGCAAATACTATGGATCTTCCAGAGAAATTACTTCCTCGTATATCAAGCAGAATGGGAATTCAGAGGCTTTGCTTTGGCCCATATAATTTTCACCAGCTTCAAGAAATCATCTCAAGTCGCCTAAATGGAATTGATGTATTTGAAAAGCAAGCTGTAGAATTTGCTTCAAGAAAGGTTGCAGCTATCTCAGGAGATGCACGTCGTGCTTTGGAGATATGCAGACGTGCCGCTGAAATTGCAGATTATAGAATGAAGAACTTAATTTCTAATCCTGATCTTGTTACTACAGGAAAGCTACTTGTTGGAATGGTAGATGTTGAAGCAGCCATTCAAGAAATGTTTCAAGCACCTCATATTCAAATGATGAAAAGCAGTTCCAGGTTGAGCAAAATTTTCCTGACAGCTATGGTACACGAGCTTTATAATACAGGAATGGGGGAAACCACTTTTGAAAAGTTGGCAATGAGGGTTTCATGCCTATGTATCAGCAACGGAGAAACTTTTCCTGGATACGATACTCTGCTGCAAGTGGGCTGTAAGCTAGGTGAATGCAGGATTATTTTATGTGAAGCAGGCTCCAAGCACAAGTTGCAAAAACTACAGCTTAATTTTCCTAGTGATGATGTGGCCTTTGCGCTGAGAGACTGCAAAGATCTACCTTGGCTGTCAAAGTATCTAATGTAG 2529 0.4342 MAATPSKCKLRSQSDAKSSPAVTPSTPQTLHLRRSPRARSLLFDATKSPSSPCEISLTTPKRRNQRISDNVGHDSGEVKVATKKSAKMNGASKEKYRKSSIEASLAPVTPASSEKTSKRKREGEKKDVVTRAKRGKFENEKRSSKLPARRQYYKKVIFDGGEFEVGDDVYVKRREDAASDDEDPEVEVCRMCFMTNNEVLIECDDCLNGFHLKCLRPPLKDVPEGDWICGFCEARRIGKEVHLPKPPVGKKVVRTYREKLLSSDLWAAHIESMWKEVDGNYWCRVRWYTIPEETSVGRQPHNLRRELYRTNEFADIEMESVLRHCFVMTPKEYANASNEGDDVFLCEYEYDINWHSFKRLADIDNERENGEETDSDEDWGLDKESDSDTDEDIGYEEENTKDGLSQPSKGHHLAANLHKGRFFGLQKIGTKRIPQHVRSHKQTDLERAKATLLLASLPKSLPCRNKEMEEITTFIKGAISDNQCLGGCLYIHGVPGTGKTMSVLSVMRSLKAEVDAGNIKPYTFVEINGLKLASPENIYRVIYEALNGHRVSWKKALHLLNERFVEGKKIRDEADRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFGPYNFHQLQEIISSRLNGIDVFEKQAVEFASRKVAAISGDARRALEICRRAAEIADYRMKNLISNPDLVTTGKLLVGMVDVEAAIQEMFQAPHIQMMKSSSRLSKIFLTAMVHELYNTGMGETTFEKLAMRVSCLCISNGETFPGYDTLLQVGCKLGECRIILCEAGSKHKLQKLQLNFPSDDVAFALRDCKDLPWLSKYLM* 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0196 842 MobiDBLite consensus disorder prediction 44 65 - -
Vra4g0196 842 ProSiteProfiles BAH domain profile. 244 361 IPR001025 GO:0003682
Vra4g0196 842 MobiDBLite consensus disorder prediction 66 81 - -
Vra4g0196 842 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 142 837 - -
Vra4g0196 842 Gene3D - 640 730 - -
Vra4g0196 842 MobiDBLite consensus disorder prediction 7 33 - -
Vra4g0196 842 ProSitePatterns Zinc finger PHD-type signature. 189 232 IPR019786 -
Vra4g0196 842 Pfam ATPase family associated with various cellular activities (AAA) 490 635 IPR003959 GO:0005524|GO:0016887
Vra4g0196 842 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 1 142 837 IPR020793 -
Vra4g0196 842 SMART PHD_3 188 233 IPR001965 -
Vra4g0196 842 MobiDBLite consensus disorder prediction 367 397 - -
Vra4g0196 842 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 455 706 IPR027417 -
Vra4g0196 842 Gene3D - 253 445 IPR043151 -
Vra4g0196 842 SMART AAA_5 485 639 IPR003593 -
Vra4g0196 842 MobiDBLite consensus disorder prediction 114 143 - -
Vra4g0196 842 MobiDBLite consensus disorder prediction 1 143 - -
Vra4g0196 842 MobiDBLite consensus disorder prediction 367 408 - -
Vra4g0196 842 Pfam AAA lid domain 663 696 IPR041083 -
Vra4g0196 842 SMART BAH_4 220 361 IPR001025 GO:0003682
Vra4g0196 842 Pfam PHD-finger 189 234 IPR019787 -
Vra4g0196 842 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 242 IPR013083 -
Vra4g0196 842 Pfam BAH domain 163 359 IPR001025 GO:0003682
Vra4g0196 842 SUPERFAMILY FYVE/PHD zinc finger 176 239 IPR011011 -
Vra4g0196 842 ProSiteProfiles Zinc finger PHD-type profile. 186 235 IPR019787 -
Vra4g0196 842 Gene3D - 446 639 IPR027417 -
Vra4g0196 842 CDD AAA 466 642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0196 Vra-Chr4 4735371 4741234 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0196 4 841 Core DNA Replication Machinery Family AT4G14700 61.882 0.0 1007
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vra4g0196 BAH 2.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0196 K02603 - gmx:100798547 1456.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0196 4 4735371 4741234 Vra4g0196 4 4735371 4741234 ECH