Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0195 ATGGCGGCGGCGGCGTCGCAGGGGTACAGCCAACCTTCGACAATTGAGGAAGTGAGAACGCTATGGATTGGGGATTTGCAGTATTGGGTGGACGAGACGTACCTCGCTCACTGTTTCGCCCACACCGGCGAGGTTCTTTCCATCAAGATCATCCGCAACAAGATGACGGGCCAACCCGAGGGTTACGGTTTCGTCGAGTTTGTTTCCCACGAGGCAGCGGAGCGCGTGCTCCAGACCTACAACGGCACGTTTATGCCCGGCACCGAACAGACCTTCAGGCTCAATTGGGCCTCTTTCGGCATCGGTGAGCGCAGGCCCGACGCGGGCCCAGAACACTCAGTCTTCGTGGGCGACCTTGCGCCCGACGTAACTGACTATCTTCTCCAAGAAACCTTCCGGGCTCACTACCACTCCGTTCGCGGCGCCAAGGTCATCACGGATCCCAACACGGGCCGCTCTAAGGGCTACGGCTTTGTCAAATTCTCCGACGAGAACGAACGCAACCGCTCCATGAGCGAGATGAACGGGGTTTATTGCTCCACTAGAGCCATGCGCATTAGCGCCGCCACGCCCAAGAAAAGCACCAGTGGTCACGCGGCGCCCAGCAAACCGGTGAACCAGACTCCGGCGTACACTGCGCCGGTTCAAGTTCAACCTCCGGAGTATGATGTTAATAACACTACCATTTTTGTTGGTAATTTGGATCCTAATGTGTCTGAGGAGGAATTGAAGCAAAACTTTCTTGAATTTGGAGAAATTATCTCTGTTAAAATTCCTCTGGGCAGGGGATGTGGCTTTGTTCAATTTAGGACTAGAGCATCAGCTGAAGAAGTTATTCAGAATACGCAGGGAAAGATCATAGGCCAACAAGTGGTGAGGATTTCTTGGGGTAGGACCCTAGCAGCTAGACAGGACTTACATGGTAGGTGGGGCCAACAGATGGATCCAAGTCAATGGAATGCCTACTATGGATATGGGCAGGGTTATGAAGCATATGGTTATGGGGCTGCTCAAGACCCTTCATCGTATACATATGGTGCATATGGTGCATATGGTGGCTATCAACAGTATCCCTCCCAACAGGTTGAAGGTGCTCAAGACCCAACTGGTATGCCTGCACCTACCATGGATCCAAGGGAGGAATTGTATGATCCCTCGGCAATGCAAGATGTTGACAAGTTAAATGAGGCATACTCCAGAGTACATGGAAATGCCATTTTAGGGCGATCCCTATGGCAAACATCCTCTTCATCATCCTTACCAAAAACTTAA 1272 0.5189 MAAAASQGYSQPSTIEEVRTLWIGDLQYWVDETYLAHCFAHTGEVLSIKIIRNKMTGQPEGYGFVEFVSHEAAERVLQTYNGTFMPGTEQTFRLNWASFGIGERRPDAGPEHSVFVGDLAPDVTDYLLQETFRAHYHSVRGAKVITDPNTGRSKGYGFVKFSDENERNRSMSEMNGVYCSTRAMRISAATPKKSTSGHAAPSKPVNQTPAYTAPVQVQPPEYDVNNTTIFVGNLDPNVSEEELKQNFLEFGEIISVKIPLGRGCGFVQFRTRASAEEVIQNTQGKIIGQQVVRISWGRTLAARQDLHGRWGQQMDPSQWNAYYGYGQGYEAYGYGAAQDPSSYTYGAYGAYGGYQQYPSQQVEGAQDPTGMPAPTMDPREELYDPSAMQDVDKLNEAYSRVHGNAILGRSLWQTSSSSSLPKT* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0195 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 227 299 IPR000504 GO:0003723
Vra4g0195 423 SMART rrm1_1 113 187 IPR000504 GO:0003723
Vra4g0195 423 SMART rrm1_1 228 295 IPR000504 GO:0003723
Vra4g0195 423 SMART rrm1_1 20 95 IPR000504 GO:0003723
Vra4g0195 423 MobiDBLite consensus disorder prediction 189 210 - -
Vra4g0195 423 CDD RRM2_SECp43_like 111 190 - -
Vra4g0195 423 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 9 356 - -
Vra4g0195 423 Gene3D - 18 98 IPR012677 -
Vra4g0195 423 SUPERFAMILY RNA-binding domain, RBD 105 196 IPR035979 GO:0003676
Vra4g0195 423 Gene3D - 102 203 IPR012677 -
Vra4g0195 423 SUPERFAMILY RNA-binding domain, RBD 10 98 IPR035979 GO:0003676
Vra4g0195 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 99 IPR000504 GO:0003723
Vra4g0195 423 Gene3D - 211 304 IPR012677 -
Vra4g0195 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 178 IPR000504 GO:0003723
Vra4g0195 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 89 IPR000504 GO:0003723
Vra4g0195 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 229 292 IPR000504 GO:0003723
Vra4g0195 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Vra4g0195 423 CDD RRM1_SECp43_like 20 100 - -
Vra4g0195 423 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED 9 356 - -
Vra4g0195 423 SUPERFAMILY RNA-binding domain, RBD 209 328 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0195 Vra-Chr4 4731046 4734309 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0195 20 306 Eukaryotic Initiation Factors Gene Family AT2G36660 26.027 1.89e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0195 - - gmx:100799421 639.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0195 4 4731046 4734309 Vra4g0195 4 4731046 4734309 ECH
Vra4g0195 4 4731046 4734309 Vra2g0544 2 4294232 4297664 PCT