Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0191 ATGGAGGTCCGTTACAATAACATGAGCTATCCCTACAGCACAGCAGGAAGCTTTATTGAATATGTTGAAGGTCTTACATACGAACATGTTAACTTCATTTTTTCTGGTGCCTCACATGCTCAGGAGAGTTCATACCCTTCAAGTTCGACTACAAGCTTTGACAAATCTGGGCTGTCTGAACCAGGCAGTACCTCGTACTATCAGGATAGTAATGGTTACGAGGTGAATTATCATGAGCAATTGATGGATGAGTATAGAAGGCACTCGGAAAACTCTGCAACAATCAATGAACAGATGGCAACAATACGTATAGAAAGGGAAGAAGGAGTAAACAATGTGTCACTAGACAGTTCTACTGAATGTCCGAGAAGGCATCATAATGATTTCAATGACTATGAGGTCAGTTGGGAAGACAATATTGATCCTGACAACATGACCTATGAGGAACTACTTGAATTAAGTGAGACGGTTGGAACTGAGTGTCGTGGTCTCACACAAGAACAAATTTCATCGATTCCAGTATCGAAGTACAAGTGTGGCCGCTTTTTCTTCTTTAGGAAGAAGTCACGGGAGGAGAGATGCGTGATTTGTCAGATGGAATATAGAAGAGGGGAGAAGAGGATGACTTTACCATGCAAACATGCCTATCATGCTAGCTGTGGGAACAAATGGCTTAGCATCAATAAGGCTTGCCCTATGTGTTACAGAGAGGTGATCGTGGACGTGTCAAAACACAAATAA 741 0.4197 MEVRYNNMSYPYSTAGSFIEYVEGLTYEHVNFIFSGASHAQESSYPSSSTTSFDKSGLSEPGSTSYYQDSNGYEVNYHEQLMDEYRRHSENSATINEQMATIRIEREEGVNNVSLDSSTECPRRHHNDFNDYEVSWEDNIDPDNMTYEELLELSETVGTECRGLTQEQISSIPVSKYKCGRFFFFRKKSREERCVICQMEYRRGEKRMTLPCKHAYHASCGNKWLSINKACPMCYREVIVDVSKHK* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0191 246 Pfam Ring finger domain 193 234 IPR001841 -
Vra4g0191 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 242 IPR013083 -
Vra4g0191 246 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 242 - -
Vra4g0191 246 SUPERFAMILY RING/U-box 193 241 - -
Vra4g0191 246 SMART ring_2 194 234 IPR001841 -
Vra4g0191 246 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 242 IPR033276 GO:0004842|GO:0016567|GO:0046621
Vra4g0191 246 MobiDBLite consensus disorder prediction 40 70 - -
Vra4g0191 246 ProSiteProfiles Zinc finger RING-type profile. 194 234 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0191 Vra-Chr4 4695812 4700049 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0191 2 245 C3H Transcription Factor Family AT3G63530 37.959 1.71e-53 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0191 K19045 - gmx:100805963 374.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0191 4 4695812 4700049 Vra4g0191 4 4695812 4700049 ECH
Vra4g0191 4 4695812 4700049 Vra2g0537 2 4248135 4252652 ECH
Vra4g0191 4 4695812 4700049 Vra2g0537 2 4248135 4252652 PCT