Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0190 ATGAATAGTTCGGGTTTGGGTGGAGGCTTTTTGTCTGGTCCTAGCGGGGCTATTTTGGACTTGGAATCTTCATTTCATAGACATCAACAGACTCAACTTGGTCATCCATCTATTACTGGTCAACAACACTTGAATATCATGGGTGGTCTCGAAAGTGATCACCCCATTGGCCTAATTGAAGTGAAAAATTTGAATGCCGGGTTGAATTTTGCTAAAGGAAAGGCAATTGCTCCTTCCAATAGTAATGAGTTGAGTGAGGAGGACGAACCTAGCTATGCAGAAGAAGGGAATTGTGAGAACCTGGATGGTGGGAAGAGCAAAAAGGGATCTCCTTGGCAGCGAATGAAGTGGACAGATAATGTGGTTAGGCTTCTTATTACAGTGGTGAGTTGTGTCGGTGATGATGGCACTATTGGGGGCGTGGATGGTCATAAAAGGAAACCTGGGGTTTTACAGAAGAAAGGCAAGTGGAAAACAGTCTCCAAGATAATGATAAGCAAGGGTTGCCATGTGTCGCCACAGCAGTGTGAGGACAAGTTCAATGACTTAAATAAGAGATACAAGAGGTTAAATGACATACTTGGAAGGGGAACTTGTTGTCAAGTGGTTGAGAATCCTGCATTAATGGATTCAATACCTAACCTGTCGACTAAGATGAAGGATGACGTTAGGAAGATCCTGAGCTCAAAACACCTGTTTTATAAGGAGATGTGTGCCTACCATAATGGGCAAAGAATACCAAATTGTAATGAACTTGATTTACAGGGTTATTCTATGGAGCATGGGAAGGACTCAAGAAGAGAAAATAATGGATCTGAAGATGAAGATAACAATGATAGCGAGGATGATGAGTTGGAAGATGAAATTAATATTAATGCACACGAGGATGGAGGGAGGATGCAGGAACTCTGTGATAGAAATATATTAAGTGAGGAGGATGGCCATTTTGGTCCACAAACTTCTCGGATGGACAAATTTGAGGTTGAAATGGCAAGAGTTTTTCAAGACCCCGGGAAGTCATTACGCGAACAAAGAGAGTGGATTAAAATCCAGATGTTGCAGCTTCAAGAGCAAAATATCAGCTACCAAGCCCAAGCTCTTGAACTTGAGAAACAACGGCTTAAGTGGTTAAGATACTGCAGCAAGAAGGACAGAGAGCTGGAGAGACTGAGATTGGAGAACAAAAGAATGAAATTAGAAAATGAGCGCAGGATCTTGAAACTGAAACAAAAAGAGCTAGAGACAGATTTCAGTACATCTGAAATGTCTTTAGACCCTGCCTCTATAGGAATCAACCGGCCGCAGGGGAGGGAGCATATCAGCTTAGGCAGACAACAGTAG 1341 0.4243 MNSSGLGGGFLSGPSGAILDLESSFHRHQQTQLGHPSITGQQHLNIMGGLESDHPIGLIEVKNLNAGLNFAKGKAIAPSNSNELSEEDEPSYAEEGNCENLDGGKSKKGSPWQRMKWTDNVVRLLITVVSCVGDDGTIGGVDGHKRKPGVLQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGTCCQVVENPALMDSIPNLSTKMKDDVRKILSSKHLFYKEMCAYHNGQRIPNCNELDLQGYSMEHGKDSRRENNGSEDEDNNDSEDDELEDEININAHEDGGRMQELCDRNILSEEDGHFGPQTSRMDKFEVEMARVFQDPGKSLREQREWIKIQMLQLQEQNISYQAQALELEKQRLKWLRYCSKKDRELERLRLENKRMKLENERRILKLKQKELETDFSTSEMSLDPASIGINRPQGREHISLGRQQ* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0190 446 MobiDBLite consensus disorder prediction 417 446 - -
Vra4g0190 446 Gene3D - 117 189 - -
Vra4g0190 446 Pfam Myb/SANT-like DNA-binding domain 114 239 IPR044822 -
Vra4g0190 446 PANTHER F16F4.11 PROTEIN-RELATED 12 420 - -
Vra4g0190 446 Coils Coil 380 416 - -
Vra4g0190 446 MobiDBLite consensus disorder prediction 78 112 - -
Vra4g0190 446 MobiDBLite consensus disorder prediction 261 284 - -
Vra4g0190 446 PANTHER TRANSCRIPTION FACTOR TRIHELIX FAMILY-RELATED 12 420 - -
Vra4g0190 446 Coils Coil 352 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0190 Vra-Chr4 4685363 4691391 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vra4g0190 Myb_DNA-bind_4 3.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0190 - - gmx:100798932 775.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0190 4 4685363 4691391 Vra4g0190 4 4685363 4691391 ECH