Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0188 ATGACTCACCCCTTTTGCTCCAACGACTTCAATGCTTGGTTTGACCTCAATTCTCCATTTTCTTCATCACCTCCATTCTATTTTCCTTCTGCTTTTCATCACAATCAATCTTCTCCTTCTCCTTCTCCCCCCAAAGAAGCTCTTCCTTTCCTTAACCTAAGCCTTGCAAGGGGTGGTGAAGATCTTGAATCTTCCTTCAGTGCCATGAAAGTCAACAGAGAGAAGGAGAGAGAAGCAAGCATATCGTCTAATAATAATAATAACTCTTTGGATGATGAAACTGTCACGGTGGCTTTGCACTTAGGGCTTCCAACCATTCCAACCACTACTGCTTCTGCTGATTCAACTTCAAACACATACTCAGACAGAGAAAAAGCCATTGCTTCTGAGTATTCTCCTACTAGAATTAACAAGGGTCAGTATTGGATTCCTACTCCTGCTCAAATTCTCATCGGTCCAACACAGTTCTCCTGCCCCCTTTGTTTCAAGACTTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGAAAGGGACCAGAGTCTCTGAGGGGAACTCAACCAACAGCAATGCTTAGACTCCCTTGCTATTGTTGTGCACCTGAATGCAAGAACAACATTGACCATCCAAGAGCAAAGCCACTCAAAGACTTTAGAACCCTCCAAACTCATTACAAGAGAAAGCATGGAATCAAGCCCTTCATGTGTAGAAAATGCTGCAAAGCTTTTGCTGTTAGAGGTGATTGGAGGACCCATGAGAAGAACTGTGGGAAGCTCTGGTATTGCTCTTGTGGCTCTGATTTCAAGCACAAAAGATCCCTCAAAGATCATATCAAGGCTTTTGGGAATGGACACAAAGCTTATGGAATCGACTGTTTTGATCACGATGATGAAGCTGCCTCTGAAATTGAGCAAGAAAATGTCAATGAATCTTTACTTTCAATCTGTCACAATTGA 975 0.4246 MTHPFCSNDFNAWFDLNSPFSSSPPFYFPSAFHHNQSSPSPSPPKEALPFLNLSLARGGEDLESSFSAMKVNREKEREASISSNNNNNSLDDETVTVALHLGLPTIPTTTASADSTSNTYSDREKAIASEYSPTRINKGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPECKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGNGHKAYGIDCFDHDDEAASEIEQENVNESLLSICHN* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0188 324 ProSiteProfiles Zinc finger C2H2 type domain profile. 156 183 IPR013087 -
Vra4g0188 324 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 31 313 - -
Vra4g0188 324 Gene3D Classic Zinc Finger 155 178 - -
Vra4g0188 324 Gene3D Classic Zinc Finger 237 317 - -
Vra4g0188 324 ProSitePatterns Zinc finger C2H2 type domain signature. 158 178 IPR013087 -
Vra4g0188 324 PANTHER ZINC FINGER PROTEIN WIP2 31 313 IPR043584 GO:0003700|GO:0010468
Vra4g0188 324 SUPERFAMILY beta-beta-alpha zinc fingers 222 260 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0188 Vra-Chr4 4655793 4658025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0188 95 320 C2H2 Transcription Factor Family AT3G57670 70.229 4.40e-128 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra4g0188 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0188 - - gmx:100789416 532.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0188 4 4655793 4658025 Vra4g0188 4 4655793 4658025 ECH
Vra4g0188 4 4655793 4658025 Vra2g0536 2 4240345 4243043 ECH
Vra8g0270 8 3466139 3469889 Vra4g0188 4 4655793 4658025 ECH
Vra3g0239 3 2724405 2727154 Vra4g0188 4 4655793 4658025 ECH
Vra4g0188 4 4655793 4658025 Vra2g0536 2 4240345 4243043 PCT