Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0186 ATGGCAGAGGAACTTGACCTCGACAACCTTAAGGCACTGAAAGTTTTAGGCAAAGGAGCCATGGGCACTGTGTTTCTCGTGCAACACAACTCCGGCCACGTGGCGCTCAAAGTGGTCGACAAATCGTCATCCCTCCACGACGGTGCTCGCCGTGCCCACTGGGAAATCACTGTTCTCTCTCGCTTATCCCACCCCTTCCTCCCCACCCTACTGGGTTCTTTCGAGTCCAACAACTTAATGGGCTGGGCCGTCCCCTACTGCCCTGGCGGCGACCTCAACCACCTCCGCTATCGCCAAACGGATCACATATTCTCCCCCGCCGTCGTCCGCTTCTACCTCGCCGAGATCCTCTGCGCTCTCCACCACCTTCACTCCATGCACATCGTGTACCGCGACCTCAAACCCGAAAACGTCCTCATTCAACAATCCGGCCACGTCACTCTCACCGACTTCGACCTCTCCCGAACTCTCTCTCCCACCAAAACCAACACCTCCTCTCCCTCCAACTCCCACATTCCTGACACCGCCCTGCGCAAGCCCCGCCGCAATTTCCGCTGGGCCCCACTCACGAAGACCCCCAAGTCCGCCCGAGTCACCCCCGCCGCTCGCCGCGCCGCGCCAAGCTTCGAGCGCTCGAACTCGTTCGTGGGCACCGAGGAGTACATCGCGCCGGAGGTCCTCCGAGGCGAGGGGCACGGCTTCGCCGTTGACTGGTGGGCCCTCGGCGTCCTCGCCCACGAGATGGTGTACGGAACGACGCCGTTCAAGGGGAGGAATCGCAAGGAAACGTTTCGCAACGTGTTGTTGAAGACGCCCCAGTTTGTTGGGAAGAAAACAGCGTTGACGGACCTAATCTCTCGGTTGCTAGAAAAGGACCCCTCCAAGCGTTTGGGTTATGTTCGCGGCGCCACCGAGATCAAGGAGCACGAGTTCTTCAGAGGGGTTAAGTGGGACCTACTAACGGAGGTTGTGCGGCCGCCGTTTATTCCTTCAAGAGAAGAGGTTACGAAACCTTTCGCCGATGGACTTGACGTAAGGGGATACTTTCAGAGCCTGAAATCTCCACCGTCTTTGCCCCCTTCGCCGTTACGGTCACCGTCGTGTGAGTTTCGGAAAAACGTCTCTTTACCGGAATTCTGA 1140 0.5851 MAEELDLDNLKALKVLGKGAMGTVFLVQHNSGHVALKVVDKSSSLHDGARRAHWEITVLSRLSHPFLPTLLGSFESNNLMGWAVPYCPGGDLNHLRYRQTDHIFSPAVVRFYLAEILCALHHLHSMHIVYRDLKPENVLIQQSGHVTLTDFDLSRTLSPTKTNTSSPSNSHIPDTALRKPRRNFRWAPLTKTPKSARVTPAARRAAPSFERSNSFVGTEEYIAPEVLRGEGHGFAVDWWALGVLAHEMVYGTTPFKGRNRKETFRNVLLKTPQFVGKKTALTDLISRLLEKDPSKRLGYVRGATEIKEHEFFRGVKWDLLTEVVRPPFIPSREEVTKPFADGLDVRGYFQSLKSPPSLPPSPLRSPSCEFRKNVSLPEF* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0186 379 Gene3D Transferase(Phosphotransferase) domain 1 91 163 - -
Vra4g0186 379 Pfam Protein kinase domain 12 164 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0186 379 Pfam Protein kinase domain 212 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0186 379 PANTHER FLIPPASE KINASE 1-RELATED 5 356 - -
Vra4g0186 379 SUPERFAMILY Protein kinase-like (PK-like) 7 361 IPR011009 -
Vra4g0186 379 ProSiteProfiles Protein kinase domain profile. 10 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0186 379 ProSitePatterns Protein kinases ATP-binding region signature. 16 37 IPR017441 GO:0005524
Vra4g0186 379 MobiDBLite consensus disorder prediction 158 177 - -
Vra4g0186 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Vra4g0186 379 Gene3D Transferase(Phosphotransferase) domain 1 210 331 - -
Vra4g0186 379 SMART serkin_6 10 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0186 379 MobiDBLite consensus disorder prediction 158 173 - -
Vra4g0186 379 PANTHER SERINE/THREONINE-PROTEIN KINASE UCNL 5 356 - -
Vra4g0186 379 Gene3D Phosphorylase Kinase; domain 1 10 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0186 Vra-Chr4 4643512 4645068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0186 3 379 AGC Kinase Gene Family AT3G20830 58.313 1.69e-145 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vra4g0186 Pkinase 1.8e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0186 - K08286 gmx:100802613 551.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0186 4 4643512 4645068 Vra2g0529 2 4159228 4160815 PCT