Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0183 ATGGATTCTTCTGTCGTTGTGGGTAGCTCAATTTCCGAGCCTCATCATGAGATGGAATTTGAATCTCATGAAGCTGCATATGCATTTTACAAAGAATATGCTAAGTCTGCAGGGTTTGGCACTGCTAAGCTGAGCAGCCGGCGATCTAGGGCATCCAAAGAATTTATTGATGCCAAATTTTCATGTATAAGATATGGTAATAAGCAGCAATCTGATGATGCAATTAATCCACGTCCTTCTCCAAAAATTGGTTGTAAAGCTAGTATGCATGTAAAGAGAAGGCAAGATGGTAAATGGTATGTCTACAGCTTCGTGAAGGAGCATAATCACGAACTTTTACCAGCTCAAGCTCATTTTTTCCGGAGTCACAGGAGTTCTGATCCACTAGGTAATGATGTTCGAGTGCGTAGGCGAAAATCCTCAAATGCAGTTTCTAAATTATTTAGTGCATATCAGAATGTCGATTGCTTAGAAAACTTTGTGAAACATCAACATGATAAAGGACGGAGTTTGGTTCTAGAAGCAGGACATGCTCAATTACTTCTTGAACTCTTTATGCACATGCAAGAAGAGAACCCAAAATTCTTCTATGCAGTTGATTTGAATGAAGAACATCGACTAAGAAATGTGTTCTGGGTTGATGCTAAAGGCTTGGAAGATTTTACGTACTTTTCTGATGTTGTCTCTTTTGACACAACATATTTTACTAGCAAATATAAAATACCGTTGGTACTTTTCCTTGGAGTAAACCATCACATTCAACCAACATTGCTTGGTTGTGCATTGATTGCTGACGAGACAATATTTACCTATGCTTGGTTACTGCAAACATGGCTGATAGCAATGGGGGAGCGAGCACCACAAGTGCTTCTGACTGACCAAAATGACGCTATTAAAGCAGCTGTTGCCACTTTTCTTCCAGGAACACGCCACTGTTTTTGTTTGTGGCATATTTTGGAAAAGATACCAAAGCAACTACAAATTTTAGGCGCATGGCATGATAGCTTTATGGAAAAATTTAACAAATGTATATACAAATCATGGAATGAGGAGCAATTTGAAAAGAGATGGTGGAAGTTGGTTGACAGCTTTAGCCTTGGAGATGTTGAGTGGGTTCGATCCTTATATGATGACCGCACATATTGGGTGCCAACATTTATGAAAGATATTTCCTTTGCTGGCTTGTCTACTAGTTCTCGTTCTGAATGTTTAAATTCATTGGTTGACAAGTATATCCATGTTGATTCTTCTTTGAGAGAATTTATAGAACAATATAGAGTGATTCTTGAAGACAGGCATGAAGAGGAAGCCAAAGCAAATTTTGATGCCTGGCATGAAACACCTGACCTGAAGTCTCCTTCCCCTTTTGAAAAACAAATGCTGTTAGTCTACACACATGAAATTTTTAGAAAGTTCCAGGTTGAGGTGTTGGGTGCAGCTGCTTGCCATCTTAAGAAAGAAAGTGACGGCGTGACTACTGCTTATACTGTTAAAGATTTTGAAAATAATCAAAACTATTTGGTAGAATGGAACACCTCCAGCTCAGATATATGCTGTTCATGTCGTTTGTTTGAATATAAAGGTTATCTCTGCAGACATGCTATTGTTGTTCTACAAATGTCTGGTGTTTTCAGCATTCCACCAAAGTATATATTGAAAAGATGGACGAATGCTGCTATGAGCAGGCATCCTATTGGTGAAAAGTTGGAAGAGGTTCAATCAAAGGTGCGGAGATTCAATGATTTGTGTAGGCGGGCCATTATATTAGGCGAAGAAGGTTCTTTATCAGAGGAAAGTTACTACATGGCCTTAGGTGCCATCAGTGAGGCACTAAAACAATGTGTAAATTTTAGCAACCCTGTTGAGAATGGTATGAGACCTGATTCCTCAGGTACCCATGTTTGTAATGTTGAAGAAGAATATCGATCTATTATTACATCTAACAATAAGGCCCCTGGTCCGAAACTGAATATGGGAAAGAAAGCTGTGAGAACTGGTGTAGCTTGTAGGAATCAAGGAAGTATTGAAAACAGTGGAGGCGATAAAGGAAAGGTATCTCTCGTTGAAGCAGGTAGTGGGAAAGATGGTTTTCAACATATGGAGCTTACTGATCCGAGATCGCAGGGTGTCATGCCAATGCAGTTTCACAACGTGAGAGGCCAGGTGGCAATTGAATGTGAGAGAGTTTGTGCTAACTTGAGTATCCTTATATTCTAA 2217 0.3942 MDSSVVVGSSISEPHHEMEFESHEAAYAFYKEYAKSAGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDAINPRPSPKIGCKASMHVKRRQDGKWYVYSFVKEHNHELLPAQAHFFRSHRSSDPLGNDVRVRRRKSSNAVSKLFSAYQNVDCLENFVKHQHDKGRSLVLEAGHAQLLLELFMHMQEENPKFFYAVDLNEEHRLRNVFWVDAKGLEDFTYFSDVVSFDTTYFTSKYKIPLVLFLGVNHHIQPTLLGCALIADETIFTYAWLLQTWLIAMGERAPQVLLTDQNDAIKAAVATFLPGTRHCFCLWHILEKIPKQLQILGAWHDSFMEKFNKCIYKSWNEEQFEKRWWKLVDSFSLGDVEWVRSLYDDRTYWVPTFMKDISFAGLSTSSRSECLNSLVDKYIHVDSSLREFIEQYRVILEDRHEEEAKANFDAWHETPDLKSPSPFEKQMLLVYTHEIFRKFQVEVLGAAACHLKKESDGVTTAYTVKDFENNQNYLVEWNTSSSDICCSCRLFEYKGYLCRHAIVVLQMSGVFSIPPKYILKRWTNAAMSRHPIGEKLEEVQSKVRRFNDLCRRAIILGEEGSLSEESYYMALGAISEALKQCVNFSNPVENGMRPDSSGTHVCNVEEEYRSIITSNNKAPGPKLNMGKKAVRTGVACRNQGSIENSGGDKGKVSLVEAGSGKDGFQHMELTDPRSQGVMPMQFHNVRGQVAIECERVCANLSILIF* 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0183 738 Pfam SWIM zinc finger 511 540 IPR007527 GO:0008270
Vra4g0183 738 Pfam FAR1 DNA-binding domain 29 114 IPR004330 -
Vra4g0183 738 PANTHER PROTEIN FAR1-RELATED SEQUENCE 4 2 706 - -
Vra4g0183 738 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 2 706 IPR031052 GO:0006355
Vra4g0183 738 SMART 26again6 517 544 IPR006564 GO:0008270
Vra4g0183 738 Pfam MULE transposase domain 227 320 IPR018289 -
Vra4g0183 738 ProSiteProfiles Zinc finger SWIM-type profile. 506 542 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0183 Vra-Chr4 4617693 4622295 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vra4g0183 MULE 5.6e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0183 - - gmx:100805273 1318.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0183 4 4617693 4622295 Vra4g0183 4 4617693 4622295 ECH