Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0170 ATGAGAAACGGATTCTATGAGAAGTTGGAGTCGGAGCTTCAAGGTTCAAGAAATACTTATTATGTCGGTGGGCTTATGGCGTTTGAGCTTACAGAGAGAAATTCATCTTATGCCATGGCTTTGATCTGCAAGAAATTTTCAAATAGCAGTGATTTGCCAGTGTTTCCTTACACTAAGAGTTTGTTTCCATTGCAAACTGAGTTCCAGAAAAAGGAGCCTAAAGAACTTGGTGAATTGCCCGGAGTGCAGTTTCCAAATTTGCCAACTTTGAATAGCTATTTAAAGCATTGGGGAACTGATCCAGTCACTCAAAACAGAACTCTTTACACTTGGATAAATGAAGGAGGGACAGTGGGTGGCAAGAGGACATATAGAGAACAACACTTAAATGCTTCTTGTATTGCACATAAGCTCTTAACAAGTGAAAAGCCAGTGATCAAGCCTGGTGACAGGGTTCTCCTAGTCTATGTTCCTGGCCTAGATTTCATTGATGCCTTCTTTGGATGTCTAAGAGCAAAAGTTTTACCAGTCCCAGTTCTTCCCCCGGACCCCATGCAAAGAGGTGGACAAGCACTTCTAAAGATTGAGAACATTGCCAAGTCATGTGGCATAGTGGCGATTTTATCAACAGTGGCTTATCATTCAGCAGTACGTGCAGGTTTAGTGAAAAGTTTTATCTCATTAACTGGAAAGATTGGGAAACCCGCAGCTCAGTGGCCTAAACTTCCTTGGCTGCACACTGACACTTGGGTCAATAATAACTCAAGAAATTTGGCTTTGGAAGATGCAGATGATCAATGTGAATCCAAGCCTGGTGATTTATGTTTCTTGCAGTTTACCTCAGGTTCAACTGGTGATGCTAAAGGAGTCATGATAACACATGGAGGGCTTATTCACAATGTGAAGTTGATGAAAAGCATATACAAGAGCACCTCAAGGACTATGCTAGTGAGTTGGCTTCCTCAGTATCATGACATGGGGCTGATTGGAGGACTTTTTACAGCTCTTGTTAGCGGTGGATCTGCTGTGCTTTTCTCACCGATAACATTTATTAAGAAACCACTCTTGTGGCTTGAAACCATGAGCAAGTATCAAGCAACTCACAGTGCTGGCCCCAACTTTGCTTTTGAGTTGGTGGTTCGAAGGTTAGAGTCTGAAAAAGACAAGCTTCAGAATTTAAACCTTTCATCCATGATTTTTCTCATGGTTGCCGCTGAGCCAGTGAGACTGAAGACCCTGAAAAGGTTTCTTGATTTAACTGCTTCTTTTGGCTTATCTCAGAAGGTGATGGCTCCTGGATATGGCTTAGCAGAAAATTGTGTGTTTGTCAGTTGTGCATTTGGTGAAGGGCGTCCTATTCTTGTTGACTGGCAGGGAAGAGTTTCTTGTGGATACATTCACCCAGGTGATGCAGATATTGACATTAGAATAGTTGATCCAGAGAATGGTGAAGAGCTTCGAGAAGATGGAAAGGAAGGAGAAATCTGGATAAGTAGTCCAAGTGCTGGAATAGGATACTGGGGAAAGGAAGAACTGAGTCAGAAAACTTTTAGAAATGAGCTTCAGAACCATCCTGGACGAAACTACACAAAAACTGGAGACTTGGGAAGAATAATTGATGGGAAGCTATTCATCACCGGGAGAATCAAGGATCTTATCATTGTGGCTGGAAGAAATATCTACTCAGCAGATGTTGAGAAAACAGTGGAGAGTTCATCTGAATTTCTTCGTCCTGGGTGTTGTGCAGTCGTTGGTGTCCCTGAGGAGGTTCTATCAGCAAAGGGGATTACCCTGCCGGATGGATCTGACCAAGTTGGCTTGGTTGTGGTTGCTGAAGTTAGGGATGCTAAAGCGGTGAGCAAAGATGTGATCGAGCATATTCAGACTCGTGTAGCAGAAGAACATGGAGTCAGTGTTGCTTCTGTCAAGCTGATCAAGCCAAGAACCATCAGCAAAACAACATCAGGAAAAATCAAGAGATTTGAATGTCTCAAACAGTTTGCAGATGATACACTGAATTTGGTGCCTCAACCTATTCAGACAAGGAGAACACTGTTAAGATCATTTACTACAGGAACATGCACAGAAGGAAGAACACCCCGGGCCCAGCTGGTGAGAAGTAGTAATCCTCTGCCTATTCCAAGAATCAGTAACAAGGAAATTGTGGAGCACTTGAAAAGGCTTGTTTCTGAGCACTCAGGAATCCCAGTCAAAGATATCTCAGTCACAGAAAACATGTCTGCATACGGAATTGATTCAATCGGAGTGGTTAAAGCAACTCAAAAACTCTCAGATTTCCTGGGTGTGCCAGTTGCAGCTATAGATGTCTTCACTGCATCATGCATTCAAGAATTGGCTAACTTCTCCGAGAATCTTATGTTAAAGTCTCAACCTCAACTTATGAGCAATTCATCCCATGCTCTGGGTTCTGAAATTGACACCACTGATATGATTGTCGATGTGTCCAGGTCTCGCCAATGGGGTATCCGTTTACTCCAACTCCTAGCACTAATTTATATTTCTGTCATGCTGTTTTCTCCTGCTTACCTATCCATCACTGTTTTTCAAAGTTTCATACCAAATGCCAGCGAATCGGCCAAACTATGCCCTGACACCCGAAATATCCGTCTATTCAATGGATTTTGTCAAGTGGTGGGCGCTGTATAA 2667 0.4274 MRNGFYEKLESELQGSRNTYYVGGLMAFELTERNSSYAMALICKKFSNSSDLPVFPYTKSLFPLQTEFQKKEPKELGELPGVQFPNLPTLNSYLKHWGTDPVTQNRTLYTWINEGGTVGGKRTYREQHLNASCIAHKLLTSEKPVIKPGDRVLLVYVPGLDFIDAFFGCLRAKVLPVPVLPPDPMQRGGQALLKIENIAKSCGIVAILSTVAYHSAVRAGLVKSFISLTGKIGKPAAQWPKLPWLHTDTWVNNNSRNLALEDADDQCESKPGDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMKSIYKSTSRTMLVSWLPQYHDMGLIGGLFTALVSGGSAVLFSPITFIKKPLLWLETMSKYQATHSAGPNFAFELVVRRLESEKDKLQNLNLSSMIFLMVAAEPVRLKTLKRFLDLTASFGLSQKVMAPGYGLAENCVFVSCAFGEGRPILVDWQGRVSCGYIHPGDADIDIRIVDPENGEELREDGKEGEIWISSPSAGIGYWGKEELSQKTFRNELQNHPGRNYTKTGDLGRIIDGKLFITGRIKDLIIVAGRNIYSADVEKTVESSSEFLRPGCCAVVGVPEEVLSAKGITLPDGSDQVGLVVVAEVRDAKAVSKDVIEHIQTRVAEEHGVSVASVKLIKPRTISKTTSGKIKRFECLKQFADDTLNLVPQPIQTRRTLLRSFTTGTCTEGRTPRAQLVRSSNPLPIPRISNKEIVEHLKRLVSEHSGIPVKDISVTENMSAYGIDSIGVVKATQKLSDFLGVPVAAIDVFTASCIQELANFSENLMLKSQPQLMSNSSHALGSEIDTTDMIVDVSRSRQWGIRLLQLLALIYISVMLFSPAYLSITVFQSFIPNASESAKLCPDTRNIRLFNGFCQVVGAV* 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0170 888 Gene3D - 712 792 IPR036736 -
Vra4g0170 888 Pfam AMP-binding enzyme 118 555 IPR000873 -
Vra4g0170 888 Gene3D - 78 549 IPR042099 -
Vra4g0170 888 Pfam Phosphopantetheine attachment site 725 788 IPR009081 -
Vra4g0170 888 ProSiteProfiles Carrier protein (CP) domain profile. 719 793 IPR009081 -
Vra4g0170 888 SUPERFAMILY Acetyl-CoA synthetase-like 98 677 - -
Vra4g0170 888 CDD FAAL 105 669 IPR040097 GO:0008610
Vra4g0170 888 SUPERFAMILY ACP-like 716 793 IPR036736 -
Vra4g0170 888 PANTHER AMINE OXIDASE 1 867 - -
Vra4g0170 888 ProSitePatterns Phosphopantetheine attachment site. 748 763 IPR006162 -
Vra4g0170 888 Gene3D - 550 678 IPR045851 -
Vra4g0170 888 PANTHER AMP-BINDING ENZYME 1 867 - -
Vra4g0170 888 Gene3D - 1 47 IPR036188 -
Vra4g0170 888 ProSitePatterns Putative AMP-binding domain signature. 277 288 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0170 Vra-Chr4 4516188 4519087 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0170 273 588 Monolignol Biosynthesis Gene Families AT1G20480 26.183 1.80e-19 91.3