Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0152 ATGTTAGGTACCAATATTGGTAAGGATCCTAGCATGTTTCCTCAACATGACCCACAAGATCTATCTGGTAGTGTTTCAAATACAGGGCATCATGAGCAAAATAATATCACTATGCAGGCAGGGGAAGAATTTTACGTTAATGTTGGTCGTGATGGAATTGCTGCTGGAAGGGTTCTTGTTTCACCAGATATACCACGAAATCATCAGACTGTGTTTGGTTTGAATAGAGAGAATGGCAATGTGAGATATGAAGATCTTACTAATATTTTGGGGCTGAGGAGAATGAACTCTGAGAATTCTTCTGATATATCTGACTTTTTATCTTTAAAACAGTCAGTACAGGAGATGGAAAATGGAGCTTCTGTAAACATTTCAAACAAAATTCAAAAGGGTGATGGTATGTTGAGGAAGACTGTTCAAGAACCAGTGGGTGACCAGTCTGGTCTCGCAGTTGTGTCACCACTTTGTAGATATGAAGCTTCTCAGTCCAATGGATTTTCTGGTTCAGGAGTCGTAGATGATTTTCTGTCTGGGAAAATGAAGTTTCTGTGCAGTTTTGGTGGAAAAATATTACCAAGACCCAGTGATGGGAAACTCAAATATGTAGGGGGAGAGACCCACATCATATCTATCCAAAAGGATATGGCGTGGCAAGAGCTTATGAAGAAGACCTTGGGTATTTGCAATCAACCTCACACAATAAAGTACCAGCTTCCAGGAGAGGATCTTGATGCTCTAATATCTGTTTCCTCTGATGAAGATCTTCAAAATATGAAAGAGGAATACCATGGGCTTGAAAGGCATGAACGTTCTCAAAAACTCAGAATTTTTTTAGTTCCTTTGGGTGAATCCGAAGATAAATCATCAACAGAGGTGAATGTTGTTCAACAGAGTGATCCTGATTACCAATATGTTGTTGCTGTAAATGGTATGGGAGACTCTACTAGAACAAACATCCGTGGGCAAAATTTGACAAATGCATCCAGTCAGTTGGGGGCAGATTTGAACTTTATTCCAGTTCTCCCAAAAACTCCAAATGCTTCTTCTTTGGAGATCAGGGATGGTACTAATGCTTTAAATCCAGATGGGCTTTTTAACGATTCCCTGAATTTGCAAAGACCCTTGTCAATTCCTCCCGCTCCAATTCCGGTAGCAGGTTCTAACACAGGTTATATACAATTACTGGGTGACCACTCATGTCAGGGAAGCATTGAGAGCAATGCATCATATGCTCAGCTACATCCTGAGTGCTATAATCTAAGCACTGATGGTGGCATATATCCTCAGCACGTGAGTGATACTTGTCCTTATCAGCATGGTGATGTTGGTCAGCCCAAGAAGCTCAATGGAGGTCATTTGGACTACAGTCCCAGCAAGGAATTAGTGACTCCTGTATATGTTAATCCCAGAGATGAATTTTTTGGTGGAAGGTCCTTGCAAAGGGAAAGGGTCTTCTCTAAAACTCCTCGGTCATTGTTGGATGAGGTAATTTGTCGACAGGGTGAATCTTATGGAATTACAGACTCCCCTCATAGGATGCCCCATGCATTTTCTGATCCACAGTTGCTACAAAGTGGAGCAAAGTCTGGTTACTGCTCCCAAAATGGAAATGATCAATCTTTCTCCTTGAACCTTGAAAAGGGTCAAATATCTTCATTGTTAATCCCTAGTGTCTCACGTGTGAAGGTCACAGAGCATCAACATGATTCTTTTGTCCATCATCCTCAAATACAAAGTACGACACCAGAAGGGGAGTCAGCTCAGGCACCCAAAAGGCAAGATTTGACATCTTCTCCATACTATGAATCCATGGGAATGAATAATCTTGTTCACATGGATAACACATTAGCTGAAAAAAAGAACTCATTTGCTCAAACTGACTTGGGTATACCCAGCTACGATGCAAAGGATGTTCAGGAAAGTTCTTTGAATTTAGGAAGGATGAAGATTGTTGAACAAAATAATTTTATTCCCAAGGATAGCAAGGTTCAGCAGGGGAAATCAACTGCCATTGACAAGGGATTTGTGACTGAGTTGCATCTCTTGAACTCCTTCCCTGCTAAAAACTTAAATGCTAATATTAATATGCAAAAGAATTGGGATCTACCTTTTGAGGGTATTGTCCCTATTCCATCAGACATGATGGATCTCTCCTTAAATAATTTTGTGGAAAAGACCACATGTGATTCTAACATGAGCCAAAGGACTAGTGAGCACAAAATCAACGCTTTGGCTAAAGGTCTGAATGGTGAGCAAGGGTTTGATTTTTCATTGACCAGAAATTTTGAATTAAATGCTCCAATTTTAAATTCTGAAGTAGGTTCTGGTGATAAAAGTTCCCGAGGAGGTTATACTAATAAGTTGTCCATTCATCCAGCTTCTCATAAAGCTGCACAAATCCATCCTTCGAAGAATCAGATGGCTATAGCTTTTGAAGAAAATCCTACAGCATGCTATGGAAGTTTGTATCCTGCTGCATTTTGTGATGATCTTGGTCCAAGTGTAAACATGCCTATGAATGGCCCTGATTCAGACACTATTATGTCACTTAAAAAGGCACCACCTTTCCTTGATGACTCTATTACCAGCACTGGACAAGTGGTGGATCGGTTTATCCCCAAACAGTCTGCCTCTGGAATGTCAAATGTTGATGATAAAGTTTCAGAACAACAAAAAATTTTAGAAGGCTACACTGATGTGAATCAAGTGGACACGTTCAATGTAGCAGACATGGCTCGTGTTGTTCATCCTTATATTTCTAGTGATATTGGAAGTGTTGTATCCCTATCTCATACAGAAGCTGGGAGCATCATCCCTGAGTTTGAGCCCGAGGATTTTAATGAAGACAAAAATGAATTCTTTTCTGATGCAATGATAGCAGAAATGGAGGCTAGCATTTATGGTTTACAGATAATAAGGAATGCTGATCTTGAAGAACTTACAGAGTTGGGTTCTGGTACTTATGGCACTGTTTATCATGGAAAATGGCGGGGAACAGATATTGCTATAAAGAGAATCAAAAAGAGTTGCTTTGTTGGAAGGTCTTCTGAGCAAGAACGGTTGGCAAAAGATTTTTGGAGAGAAGCACAAATCCTTTCAACTCTTCATCATCCCAATGTGGTTGCATTTTATGGAATAGTACCGGATGGGGCGGAAGGAACCTTAGCAACTGTAACAGAATACATGGTTAATGGTTCCCTTAGGCATGTCCTTGTAAAGAACAATAGATTACTTGATCGTCGTAAAAAGCTAATAATTGCCATGGATGCCGCTTTTGGTATGGAATATTTGCACTCAAAAAATATTGTCCATTTTGATTTGAAATGTGACAATTTGCTTGTGAATCTAAGGGATCCACAACGACCAATATGCAAGGTTGGTGATTTTGGATTATCAAGAATTAAACGCAATACCCTTGTATCTGGAGGTGTGCGAGGAACCCTTCCATGGATGGCACCGGAGCTGTTGAATGGGAATAGCAGTCGTGTTTCTGAAAAGGTTGACGTTTTCTCATTTGGCATCTCAATGTGGGAGTTATTAACAGGAGAGGAACCTTATGCAGATATGCATTGCGGCGCCATTATTGGGGGTATTGTAAAGAACACTCTGAGACCTCCTGTGCCTGAACGGTGTGATTCTGAATGGAGGAAGCTTATGGAAGAATGTTGGTCACCTGACCCTGAAAGCCGGCCATCATTCACAGAGATAACCAGCAGGTTAAGATCCATGTCTCTAGTCCTTCAAACAAAAGGGTTAAGACCCTTCTGA 3768 0.4055 MLGTNIGKDPSMFPQHDPQDLSGSVSNTGHHEQNNITMQAGEEFYVNVGRDGIAAGRVLVSPDIPRNHQTVFGLNRENGNVRYEDLTNILGLRRMNSENSSDISDFLSLKQSVQEMENGASVNISNKIQKGDGMLRKTVQEPVGDQSGLAVVSPLCRYEASQSNGFSGSGVVDDFLSGKMKFLCSFGGKILPRPSDGKLKYVGGETHIISIQKDMAWQELMKKTLGICNQPHTIKYQLPGEDLDALISVSSDEDLQNMKEEYHGLERHERSQKLRIFLVPLGESEDKSSTEVNVVQQSDPDYQYVVAVNGMGDSTRTNIRGQNLTNASSQLGADLNFIPVLPKTPNASSLEIRDGTNALNPDGLFNDSLNLQRPLSIPPAPIPVAGSNTGYIQLLGDHSCQGSIESNASYAQLHPECYNLSTDGGIYPQHVSDTCPYQHGDVGQPKKLNGGHLDYSPSKELVTPVYVNPRDEFFGGRSLQRERVFSKTPRSLLDEVICRQGESYGITDSPHRMPHAFSDPQLLQSGAKSGYCSQNGNDQSFSLNLEKGQISSLLIPSVSRVKVTEHQHDSFVHHPQIQSTTPEGESAQAPKRQDLTSSPYYESMGMNNLVHMDNTLAEKKNSFAQTDLGIPSYDAKDVQESSLNLGRMKIVEQNNFIPKDSKVQQGKSTAIDKGFVTELHLLNSFPAKNLNANINMQKNWDLPFEGIVPIPSDMMDLSLNNFVEKTTCDSNMSQRTSEHKINALAKGLNGEQGFDFSLTRNFELNAPILNSEVGSGDKSSRGGYTNKLSIHPASHKAAQIHPSKNQMAIAFEENPTACYGSLYPAAFCDDLGPSVNMPMNGPDSDTIMSLKKAPPFLDDSITSTGQVVDRFIPKQSASGMSNVDDKVSEQQKILEGYTDVNQVDTFNVADMARVVHPYISSDIGSVVSLSHTEAGSIIPEFEPEDFNEDKNEFFSDAMIAEMEASIYGLQIIRNADLEELTELGSGTYGTVYHGKWRGTDIAIKRIKKSCFVGRSSEQERLAKDFWREAQILSTLHHPNVVAFYGIVPDGAEGTLATVTEYMVNGSLRHVLVKNNRLLDRRKKLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLRDPQRPICKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLNGNSSRVSEKVDVFSFGISMWELLTGEEPYADMHCGAIIGGIVKNTLRPPVPERCDSEWRKLMEECWSPDPESRPSFTEITSRLRSMSLVLQTKGLRPF* 1256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0152 1255 Gene3D Phosphorylase Kinase; domain 1 970 1064 - -
Vra4g0152 1255 CDD STKc_MAP3K-like 983 1240 - -
Vra4g0152 1255 PRINTS Tyrosine kinase catalytic domain signature 1059 1072 IPR001245 GO:0004672|GO:0006468
Vra4g0152 1255 PRINTS Tyrosine kinase catalytic domain signature 1096 1114 IPR001245 GO:0004672|GO:0006468
Vra4g0152 1255 PRINTS Tyrosine kinase catalytic domain signature 1167 1189 IPR001245 GO:0004672|GO:0006468
Vra4g0152 1255 PRINTS Tyrosine kinase catalytic domain signature 1211 1233 IPR001245 GO:0004672|GO:0006468
Vra4g0152 1255 SMART serkin_6 977 1246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0152 1255 Pfam Protein tyrosine and serine/threonine kinase 980 1240 IPR001245 GO:0004672|GO:0006468
Vra4g0152 1255 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1102 1114 IPR008271 GO:0004672|GO:0006468
Vra4g0152 1255 Pfam PB1 domain 196 280 IPR000270 GO:0005515
Vra4g0152 1255 MobiDBLite consensus disorder prediction 17 31 - -
Vra4g0152 1255 MobiDBLite consensus disorder prediction 571 599 - -
Vra4g0152 1255 SUPERFAMILY CAD & PB1 domains 195 283 - -
Vra4g0152 1255 Gene3D Transferase(Phosphotransferase) domain 1 1065 1250 - -
Vra4g0152 1255 Gene3D - 198 280 - -
Vra4g0152 1255 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 102 1251 - -
Vra4g0152 1255 SMART PB1_new 194 281 IPR000270 GO:0005515
Vra4g0152 1255 SUPERFAMILY Protein kinase-like (PK-like) 965 1239 IPR011009 -
Vra4g0152 1255 MobiDBLite consensus disorder prediction 573 599 - -
Vra4g0152 1255 ProSitePatterns Protein kinases ATP-binding region signature. 983 1008 IPR017441 GO:0005524
Vra4g0152 1255 MobiDBLite consensus disorder prediction 1 31 - -
Vra4g0152 1255 CDD PB1_UP2 183 278 - -
Vra4g0152 1255 PANTHER SERINE-THREONINE PROTEIN KINASE 102 1251 - -
Vra4g0152 1255 ProSiteProfiles Protein kinase domain profile. 977 1255 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0152 Vra-Chr4 4225438 4241824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0152 176 441 MAP Kinase Kinase Kinase AT1G16270 39.933 1.74e-42 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vra4g0152 PK_Tyr_Ser-Thr 1e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0152 - - pvu:PHAVU_008G122700g 2044.63