Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0150 ATGTTACACTGTTTTACCATTTGTTCTGATTATTCCTCTCTGTTGCTGTGGGTTTCAGTTATAGAGATGGAAGAGGTGCGGAAGGTAACTAATGATGGAGAAAGCCAAAGAGAAGATGCATCCAGGGTTTTTCCCTGCCTATTCTGTTCAAGAAAGTTTTACAGTTCTCAAGCTCTGGGAGGACACCAAAATGCTCACAAGAAAGAAAGAACAGCTGCAAGGAAGGCCAAGAAGGTTTCTATGTACTCAAGTGTTTGCTTCTCTTCCCCACTGCCACCCCCCATGATTTTTGCTCCAACCCATCTAGACATTTTAAATACTTCCATGATCATCACTGCCCATGCAGCAGAACTCTCTTATCTCCAAAACCATCAAATTTCCAAACAATTTGGATCAAATGGTGCACCTAGATTTGGCAACACACAGTTCTATGGGGGAACTAAAAGGTTACATGGTGAAGGGAAGAACTACAATGTCAGCTGGGGGGACACATCTCAATCCAAATTATTTTTAAGTAACGATCAACATCTTGGAATTTGGAATGACAGTACCGAGAAGGAACAAAAGCTTGATTTATCTCTCCATTTGTAG 591 0.4129 MLHCFTICSDYSSLLLWVSVIEMEEVRKVTNDGESQREDASRVFPCLFCSRKFYSSQALGGHQNAHKKERTAARKAKKVSMYSSVCFSSPLPPPMIFAPTHLDILNTSMIITAHAAELSYLQNHQISKQFGSNGAPRFGNTQFYGGTKRLHGEGKNYNVSWGDTSQSKLFLSNDQHLGIWNDSTEKEQKLDLSLHL* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0150 196 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Vra4g0150 196 SUPERFAMILY beta-beta-alpha zinc fingers 42 71 IPR036236 -
Vra4g0150 196 PANTHER ZINC FINGER PROTEIN JAGGED 33 196 IPR045320 GO:0003700
Vra4g0150 196 Gene3D Classic Zinc Finger 23 88 - -
Vra4g0150 196 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Vra4g0150 196 PANTHER PROTEIN LATE FLOWERING 33 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0150 Vra-Chr4 4176411 4178055 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0150 21 196 C2H2 Transcription Factor Family AT5G48890 37.222 1.07e-15 69.7