Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0149 ATGGTGGTTATAGAGCAGGAAGAGAGCGAGCACCGAAATGCGAGTCGCTCCAACGCCGCCGGCGCTGCCAACGACGCTTCCGATGGCTTCGAAACCGCCAGCGAGGCCGATCTCGCCAGTGATGATGACGGCGGAGATGGTGGACCAGACAGACAACAGGAGCAGAATCACCCCGAGGAACACCACCGGCAGCAGCAGACTGAGCAACTACCTGAACACGATGTTCCTCAGAGCCCCGCCGAATCCTCTGAGAATGCCTTGATCACTGAAGAGTCCCCCGAGAATTCCTTGATCAACGAAGAAGAATCGAGACAGAAAGCATTGGATCAAGCAAATGAAGCAAAATTAGAAGGCAACAAGCTTTTTGTAGATGGGAAGTATGAAGAGGCGTTATCACAGTATGAAGTTGCTTTACAAGTAGCACCAGACACACCTTCATCTGTGGAAATACGGTCAATATGCCACTCGAACCGTGGTGTGTGCTTTCTGAAACTGGGAAAATATGATAACACAATTAAGGAATGCACAAAAGCATTAGAACTGAATCCTGTGTACGTTAAGGCTTTTGTGAGAAGAGGAGAAGCTCATGAAAAGCTCGAGCATTTTGAAGAGGCCATTGCTGATATGAAAAAGATCTTAGAAATTGATCCCTCAAATGATCAAGCTAGGAAAAGTATTCGGCGCCTAGAGCCCCTTGCTGCAGAAAAACGGGAAAAAATGAAGGAGGAAATGATTGCAAAACTGAAAGATATGGGCAATTCTGTCCTGGGCCGCTTCGGGATGAGTGTGGACAACTTTAAAGCCGTCAAAGATCCAAACACTGGTTCCTATTCTATCTCATTCCAACGCTAA 852 0.473 MVVIEQEESEHRNASRSNAAGAANDASDGFETASEADLASDDDGGDGGPDRQQEQNHPEEHHRQQQTEQLPEHDVPQSPAESSENALITEESPENSLINEEESRQKALDQANEAKLEGNKLFVDGKYEEALSQYEVALQVAPDTPSSVEIRSICHSNRGVCFLKLGKYDNTIKECTKALELNPVYVKAFVRRGEAHEKLEHFEEAIADMKKILEIDPSNDQARKSIRRLEPLAAEKREKMKEEMIAKLKDMGNSVLGRFGMSVDNFKAVKDPNTGSYSISFQR* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0149 283 Pfam Tetratricopeptide repeat 187 219 IPR013105 -
Vra4g0149 283 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 52 283 - -
Vra4g0149 283 ProSiteProfiles TPR repeat profile. 186 219 IPR019734 GO:0005515
Vra4g0149 283 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 52 283 - -
Vra4g0149 283 ProSiteProfiles TPR repeat profile. 111 144 IPR019734 GO:0005515
Vra4g0149 283 Pfam Tetratricopeptide repeat 154 183 IPR001440 GO:0005515
Vra4g0149 283 SUPERFAMILY TPR-like 107 230 IPR011990 GO:0005515
Vra4g0149 283 MobiDBLite consensus disorder prediction 1 110 - -
Vra4g0149 283 MobiDBLite consensus disorder prediction 70 94 - -
Vra4g0149 283 ProSiteProfiles TPR repeat profile. 152 185 IPR019734 GO:0005515
Vra4g0149 283 SMART tpr_5 186 219 IPR019734 GO:0005515
Vra4g0149 283 SMART tpr_5 152 185 IPR019734 GO:0005515
Vra4g0149 283 SMART tpr_5 111 144 IPR019734 GO:0005515
Vra4g0149 283 MobiDBLite consensus disorder prediction 44 69 - -
Vra4g0149 283 Gene3D Tetratricopeptide repeat domain 52 249 IPR011990 GO:0005515
Vra4g0149 283 Coils Coil 97 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0149 Vra-Chr4 4168875 4174843 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0149 64 242 Calmodulin-binding Proteins AT3G25230 34.759 3.74e-17 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0149 K24926 - gmx:100808386 400.208