Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0148 ATGGTGCCATTGTCTCGCAGACTCTTCACTCTCACCGTTCTGCTTGCGGTGTTGTTTTCTGCTGCCTCCAACGCAGTCAATGAAAGTGAGATCACCAAACACAAGGCCACAGAATCAAGGGATGTGGTTGAGGAAGAGAAGTTGCGTGGTCAGAACTTGAAGAATTCGTCCATGGCAGAAAGGTTGGAGGATGGTTTGAATGAACATGCAATTGATAATCCAGAGGAGATCGCTTCTATGGTTGATGAGAGCATCCGCAATTCGACGGCTCGAAGGAATCTGAATTTCTTCTCATGCGGGACGGGGAACCCAATCGATGACTGCTGGCGGTGCGACAAGCGGTGGTACCTCCGGCGAAAGAAGCTCGCCAACTGCGGCATCGGCTTCGGCCGCAACGCGATCGGTGGGCGCGACGGCCGCTACTACGTGGTGACGAACCCGAACGACGACGACCCCGTGAACCCGAAACCGGGAACGCTCCGGCACGCCGTGATTCAGGACCGACCCCTGTGGATCGTGTTCAAGAGGGACATGGTGATCACGCTGAAGCAGGAGCTGATAATGAACAGCTTCAAGACCATCGACGGGCGCGGCGTCAACGTCCACATCGCCTACGGCGCGTGCATAACCATCCAGTTCATCACCAACGTCATCATCCACGGCGTCCACATTCACGACTGCAAGCCAACGGGCAACGCCATGGTTCGCAGCTCCCCCTCCCACTACGGATGGAGAACGCTCGCTGACGGGGATGGCATCTCCATCTTTGGTTCAAGCCACATTTGGATCGACCATAACTCCCTCTCCAGTTGCTCTGATGGACTCGTCGACGCCATTATGGGCTCCACTGCCATTACCATCTCCAACAACTACTTCACCCACCACAACGAGGTCATGCTTCTGGGTCACAGTGACTCTTATGTCCGCGACAAGCAGATGCAAGTGACCATTGCTTACAACCATTTTGGGGAGGGACTTATCCAAAGAATGCCCAGGTGCAGACACGGGTATTTCCACGTGGTTAACAATGATTATACCCACTGGGAAATGTATGCAATTGGTGGCAGTGCTGATCCCACAATTAACAGCCAAGGCAACAGATACCTTGCTCCTGTGAACCCTTTTGCCAAAGAGGTAACAAAGAGAGTAGACACGGGTGCATCCGTATGGAAAAGTTGGAATTGGAGGTCTGAAGGAGACCTTTTGCTGAATGGAGCCTATTTCACCTCTTCGGGAGCAGGAGCTGCAGCGAGCTATGCTAGAGCTTCAAGTTTGGGGGCGAAGTCATCTTCTTTGGTTGGTACCCTTACCTCTGGAGCTGGTGTTCTAAACTGTCGCAGGGGTAACATGTGTTAA 1356 0.531 MVPLSRRLFTLTVLLAVLFSAASNAVNESEITKHKATESRDVVEEEKLRGQNLKNSSMAERLEDGLNEHAIDNPEEIASMVDESIRNSTARRNLNFFSCGTGNPIDDCWRCDKRWYLRRKKLANCGIGFGRNAIGGRDGRYYVVTNPNDDDPVNPKPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIAYGACITIQFITNVIIHGVHIHDCKPTGNAMVRSSPSHYGWRTLADGDGISIFGSSHIWIDHNSLSSCSDGLVDAIMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYLAPVNPFAKEVTKRVDTGASVWKSWNWRSEGDLLLNGAYFTSSGAGAAASYARASSLGAKSSSLVGTLTSGAGVLNCRRGNMC* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0148 451 Gene3D - 102 444 IPR012334 -
Vra4g0148 451 SMART amb_all 177 374 IPR002022 -
Vra4g0148 451 PRINTS Pollen allergen Amb family signature 125 142 IPR018082 -
Vra4g0148 451 PRINTS Pollen allergen Amb family signature 149 174 IPR018082 -
Vra4g0148 451 PRINTS Pollen allergen Amb family signature 185 201 IPR018082 -
Vra4g0148 451 PRINTS Pollen allergen Amb family signature 249 270 IPR018082 -
Vra4g0148 451 PRINTS Pollen allergen Amb family signature 329 348 IPR018082 -
Vra4g0148 451 PRINTS Pollen allergen Amb family signature 351 370 IPR018082 -
Vra4g0148 451 PRINTS Pollen allergen Amb family signature 393 417 IPR018082 -
Vra4g0148 451 PRINTS Pollen allergen Amb family signature 422 445 IPR018082 -
Vra4g0148 451 SUPERFAMILY Pectin lyase-like 80 446 IPR011050 -
Vra4g0148 451 Pfam Pectate lyase 186 366 IPR002022 -
Vra4g0148 451 PANTHER PECTATE LYASE 41 448 - -
Vra4g0148 451 PANTHER PECTATE LYASE 18-RELATED 41 448 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0148 Vra-Chr4 4112439 4118465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0148 39 451 Polysaccharide Lyase AT4G13710 76.722 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0148 K01728 - gmx:100809277 812.757