Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0130 ATGGATAACAGGACAAGTAATATGAGTGAAGTGCCTGAGTGTAATGTGAATATTGATGATTTTGGTATGATTGATAGTAGCACAAGTAATATTAATGAAGTATCTGACTGTAATGTCAATTTGGATGAGCATACTGCAAGTGGTTTGGAGGTGGACCCAACATTGCATATGTGCTTTGATTCCATGGATGACGCAAAAAACTTTTACAAAAACTATGCTATTAGATGTGGTTTTGCTGTCCGCACAAGAACATCAAAAAAGGATGACTACAACAATGTAATCTACCTAAGATTGGTGTGCTCTAGGGAAGGTAAATATGTTTCCTCAATCAATCCCGAAGTTAAAACACTTCCCAGTCAAACCAACCAATGTCCAGCTGGAATAACGATTTCAAAAAAGGACGACAAATGGTTTATAAGAACTGTTAACCTAAACCACAACCATGAACTATGCCCAAATACTTCAAAGTTAATTCCTGGCAATAGGAAATTGAGCATGCAAGCTAAACGCACTTTGGAGGTCAATGACGAAGCTGAAGTCCGGATTAATAAGAGTTACCTTTGTGTAATGACCGATGCAGGTGGATATGATAGCATGGACTTTATTGAGCGAGATGCTAGAAACTACATCAGTCAACACAAAAGATCCTTATGTAAGGATGGTGATGGACAAGCACTGTTACGACACTTTTCGGCAATGAAAGATTTAAACAAAGAGTTCTTTTACAAAATAGAGTTGGATGAAGGGAATAGAATTTGTTCTGTTTTTTGGGCAGATGCGAGAAGTAGAGCAGCTTGTGAAGAATTTGGAGATGTGGTGTGTTTCAACACAACTTATCTAACAAATAAGTACGATATGCCTTTTATGCCGTTTGTTGGAATAAATCATCATGGCCACTCCATATTACTTGGTTGTGGGTTGTTATCGTCGGAAGACACAAGGTCTTTTGTGTGGTTGTTTCAATCATGGTTGAGATGCATTAGTAATAAGGCCCCAAAAGGGATTATAACTGATCAATGTAGGGCAATGGCGAATGCCATTGAAGAAGTCTTTTCAAATACTAGGCATAGATGGTGTTTATGGCACATAATGAAGAAGTTGCTAGAAAAATTTAGCGCTTATAAAGAATATAATCATATCAAAAGTGCTATTAACAAGCTTGTGTATGACTGTGGTTGTGTAGCGGATTTTGAAAGTGGTTGGGAAGCTCTACTGAGCAGACATGGATTGCATCAGAATGAGTGGTTATGCACTATGTACGACGAGAGACAGAAATGGGTGCCTTGTTTCTTAAGGAATCATTTTTGGGCTGGCATGTCAATAACTCAGAGAAGTGAGGGGATGAATGCGTTTTTTGATGGATTTATAAATTCAAGCACAACCCTTCAACAATTTGTCGCACAATATGACAATGCCTTAAGAGTTAAAGCCCAAAAAGAAATCCAAGCCGATTTTTCCTCCCTTAACACCACGGTTGGATGTGGCAGTCAGTCACCGATAGAGAGACAATTTCAACAAGAGTACACACATTCAAAGTTTGAAGAAGTTCAAATGGAGTTTAGGTCAAGGATGAACTGTTTCATCAAAGAAACTTTTAAGGACAACATCTTAAACACTTATACAGTTAAAGAGGAGTGGATGGGAATCATTTGCCGCCACTCCCTTTTGGTTTTTGGCCAGGAAGATGTTTGTAGTGTGCCATCAAAATACGTCCTTCGGAGGTGGAGCAAGAATATCAGGAGAAGACACACTTTGATCAGAGCAGCTTATATTAATTCCAATCTTGAACCAACCATGCAAAGATACCAGAGTTTGTGCAAAACATTCTACGAAATTGCTGAGGTTGCATGTGAGTCTGAACCTGTTTCTAATGAGTTGGAGAAAGAACTTCGATTGCTTCGTCAAAAATTTGGATGCAGTTTAATGATGACAAATAACATTGTCAGTGACGGAGGGGAATTGCGTTACGACAATGCGGTTCCCAATTTTGTACCCGAAACCGTTGGTGAAGGTGTTGATTTACTTGTCCGTAATCCTGTAGCAGTTAAACGGAAGGGCCGACCACACACCAATAGGATGAAGTCAGCTGTTGAGAAACGGACTAAAAAAGGGAAAAGTGCCTCCACTCAAAAGACTTCAAGAACATCCGTTGAAGAATGTGGGACAAGATTACCTAATGTAGGACAAACTCAGGACCACTTGCAATTTGAGACCCAAGGGTACCAATGCTACGAAGTATCTCAACAATCAAACATGAATCAAAGTGGATTTATGTCCTTGTTAAATGCTGTGCACAACAACTTTGATGACAACATTGTTTGA 2322 0.3915 MDNRTSNMSEVPECNVNIDDFGMIDSSTSNINEVSDCNVNLDEHTASGLEVDPTLHMCFDSMDDAKNFYKNYAIRCGFAVRTRTSKKDDYNNVIYLRLVCSREGKYVSSINPEVKTLPSQTNQCPAGITISKKDDKWFIRTVNLNHNHELCPNTSKLIPGNRKLSMQAKRTLEVNDEAEVRINKSYLCVMTDAGGYDSMDFIERDARNYISQHKRSLCKDGDGQALLRHFSAMKDLNKEFFYKIELDEGNRICSVFWADARSRAACEEFGDVVCFNTTYLTNKYDMPFMPFVGINHHGHSILLGCGLLSSEDTRSFVWLFQSWLRCISNKAPKGIITDQCRAMANAIEEVFSNTRHRWCLWHIMKKLLEKFSAYKEYNHIKSAINKLVYDCGCVADFESGWEALLSRHGLHQNEWLCTMYDERQKWVPCFLRNHFWAGMSITQRSEGMNAFFDGFINSSTTLQQFVAQYDNALRVKAQKEIQADFSSLNTTVGCGSQSPIERQFQQEYTHSKFEEVQMEFRSRMNCFIKETFKDNILNTYTVKEEWMGIICRHSLLVFGQEDVCSVPSKYVLRRWSKNIRRRHTLIRAAYINSNLEPTMQRYQSLCKTFYEIAEVACESEPVSNELEKELRLLRQKFGCSLMMTNNIVSDGGELRYDNAVPNFVPETVGEGVDLLVRNPVAVKRKGRPHTNRMKSAVEKRTKKGKSASTQKTSRTSVEECGTRLPNVGQTQDHLQFETQGYQCYEVSQQSNMNQSGFMSLLNAVHNNFDDNIV* 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0130 773 Pfam FAR1 DNA-binding domain 67 151 IPR004330 -
Vra4g0130 773 PANTHER OS03G0843700 PROTEIN 545 625 - -
Vra4g0130 773 PANTHER OS03G0843700 PROTEIN 30 544 - -
Vra4g0130 773 Pfam MULE transposase domain 272 366 IPR018289 -
Vra4g0130 773 MobiDBLite consensus disorder prediction 691 705 - -
Vra4g0130 773 MobiDBLite consensus disorder prediction 708 724 - -
Vra4g0130 773 MobiDBLite consensus disorder prediction 685 724 - -
Vra4g0130 773 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 30 544 IPR031052 GO:0006355
Vra4g0130 773 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 545 625 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0130 Vra-Chr4 3611599 3614094 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vra4g0130 MULE 3.9e-33 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0130 - - vra:106778928 1154.81