Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0126 ATGAACTACAACGTTGTTCATTTCCTCATGCATCCTCTTTTCCTCAAACCCGTTTTCCTTAACGTCTTATCCGCCTCCCTCCACGGTCTCTTGTTGCTATCAGCTTTGCTGTCATGGCTTTGGAACAAAATGACATTCACTCCAGGAACCAGGGAAGAAGGCTCTATCCAGGAAGAGATACCCAATGACAGTAAGACCCTCTTCAAAACGACCGTGTTTTGTTCCCTTGCTGTTTCTGCTTTCAGTTTCGTTCTATGTTTCTTCAATTACTTCTATTGGTATGCAAGTGGGTGGTCAGAACAAAATTTTATGACCCTTTTGGATTTGGCTCTCAAAACACTTGCTTGGGGTGTTGTTTGCCTTTCCTTGCACAAAGGGTACTTCTTTTTTGCTTCTGGTGAAATAAGGTTCAGGTTTTCATTCATCTTCAGAGTTTGGTGCACCTTTTATCTAGTTTTTTCTTGTTATTCTTTCGTGGTGGACATTGTTGATGTGACCGAGATACCAACTCAGTCATTGGTTTATGATGTTATGTCCACCTCTGCGGGCTTTTTATTTTGTTACGTCGGGTACTTTGTGAAAAAAAATGGTCATGTCAACGGTATTGAGGAACCTCTTTTGAGTGATGATGCAAAAGAGACCCAGGATATGGACAATGTTACTCCTTACTCACATGCTGGAGTTTTTAGCATTCTCACTTTCTCTTGGGTGGGCTCTCTTGTGGCTGCTGGTTACAAGAAGACCTTGGACCTTGAGGATGTTCCTCAGCTAGACATCAGAAACAGTGTGGCTGGTGCTTTTCCTAGTTTCAGAGATAAACTTGAGGATGATTATGGTGCAAATGCCATCAACAGTCTCACCACGTTTAAGCTAGCGAAGAGTTTAGTAATGTCAGCTTCGAAGGAAATTCTGTTCACAGCTTTTCTTGCATTGTTAGGCACCGTGGCTTCTTATGTTGGTCCTTACCTTATTGATGATTTTGTTCAGTACCTTGATGGACAACGACAAAACCAGGGTTATGTTTTGGTTTCTGCCTTTTTCTTTGCAAAAATTGTGGAGTGCCTCTCTAAAAGGCAATTATATTTTAGGTTTCAGCAGATTGGACTTCGAATTCGATCACTGCTTGTTGCGATGATCTACAATAAGGTTCTCACACTTTCTTGTCAATCAAAGCAGGGCCAGAGTTCTGGGGAAATAATCAATCTCATGACTGTTGATGCTGAAAGAATTGGTGTCTTCAGTTGGTACATGCATGATTTGTGGATGGTGGCGCTGCAAGTCTCATTGGCCTTGTTGATTTTGTACAAAAGCCTGGGCATTGCTTCCTTTGCAACTCTCGTTACAACCATTGTTGTTATGTTGGCAAATGTTCCCTTGGGGTCATTGCAAGAGAAGTTTCAAAATAAGTTGATGGAGTCAAAAGATATTAGAATGAAGGCCACATCCGAGATTTTGAGGAACATGAGGATCCTCAAACTACAAGGCTGGGAAATGAAGTTTCTATCAAAAATAACTGAGCTCAGGAAAACTGAGGAAGGCTGGTTAAAAAGCTTTGTTTATACCTCAGCCATGACTTCATTTGTGTTTTGGGCTGCACCCACATTTATATCTGTTGTTACTTTCGGCACTTGTATGTTTTTAGGGATACCCCTTGAAGCAGGGAAGATCTTGTCTGCACTTGCAACATTCAGGATTCTTCAAGAAGTCATTTTTAGCCTTCCTGATACAATTTCTATGATAGCACAAACTAAAGTTTCTCTTGATAGGATTTCATCATTCCTTCGGCTTGATGACTTGCCGTCTGATGTTGTAGAGAAGCTTCCTCAGGGAAGTTCTAATACAGCAATTGAAGTAATTGATGGAAACTTCTCTTGGGATTTATCTTCCCCTAACCCGACATTGCAAAATATAAACTTTAAAGTTTTTCTTGGGATGAGGGTTGCTGTTTGTGGTGCTATTGGATCAGGCAAGTCTAGTTTACTTTCTTGCGTATTGGGAGAAGTACCTAAGATATCAGGCAATCTTATGGTTTGCGGAACAAAGGCTTATGTTGCTCAGTCTCCATGGATACAAAGCGGCACCATAGAGCATAATATTTTGTTTGGTAAACACATGGATAGGGAAAGGTATGAGAAGGTACTTGAAGCTTGTTCCCTGAAGAAGGACCTGGAGATTTTCTCTTTTGGTGATCAGACAATTATAGGAGAACGTGGAATAAATTTGAGTGGTGGACAGAAACAAAGAATTCAAATTGCACGTGCTCTGTACCAAGATGCTGATATATATCTATTTGATGATCCTTTTAGTGCTGTGGATGCTCACACAGGCTCTCACCTGTTTAAGGAATGCTTGCTGGGTCATTTATGTTCAAAAACAGTGGTTTATGTCACTCATCAAGTGGAGTTCTTACCTGCCGCTGACCTTATATTGGTCATGAAAGATGGGAGAATTACTCAATCTGGAAAGTATATTGATCTGCTTAAAAGTGGAACTGATTTTATGGAACTTGTTGGTGCGCACAAAAAAGCTCTATCCACTCTATATTCATTGGATGGAGCGACAACACCTAATGAAATAAGTACCTTAAAACAAGAAGAAAATGTCTCTGGCACACATGATTTTAAAGAAAAAGAGGCAAGCAAAGATGTGCAAAATGAGGAAACACACAACAAAAGTGAACCACAAGGTCAGCTTGTTCAAGAAGAAGAAAGGGAGAAAGGTAAAGTTGGGTTTTCAGTCTATTGGAACTATATCACAACCGCATATGGTGGAGCTATGGTACCTTTCATATTGTTGGCTCAGATTCTTTTTCAAGCTCTTCAAATAGGAAGTAATTATTGGATGGCTTGGGCCACTCCGATCTCAACACATGAGCAAGCACGTGTTGAAGAAATGACTCTTATAGGAGTCTATGTTGGTTTTGCTATTGGAAGTTCTTTCTGTGTCCTTGTCAGAGCAATGCTTCTAGTCACAACAGGTTATAAGACAGCTACTATACTCTTCAATAAAATGCACTTCTGCATTTTCCGTGCTCCAATGTCATTTTTTGATTCCACTCCAAGTGGTCGAGTACTTAGCAGAGCTTCAACTGACCAAAGTGCAGTGGATACAATCATTCCTTATCAAATGGCCTCACTTGCCTTCTCTATGATCCAGCTTCTGGGAATTATAACAGTGATGTCTCAGGTTGCATGGCAGGTTTTCGTTGTCTTTATACCTGTAATAGCAGTCGGCATATGGTACCAGCAATACTATCTACCAGCAGCTCGAGAGCTAGCACGTTTAATTGGAATCTGCAAAGCCCCAGTCATTCAACACTTGGCTGAGACAATTTCTGGTACTTCAACCATCAGAAGCTATGACCAGCAGTCAAGATTTAGAGAGACAAATATGAAACTCACTGATGGGTATAGTCGGCCAAAGTTCAGTGTTAGTGGTGCCATAGAATGGTTGCGCTTCCGCTTAGATATGCTGTCTGCAATCACCTTTGCCTTTTCCTTGTTAGTCTTAATATCTATTCCACCGGGAATCATAGATCCAGGCATTGCTGGTTTAGTTGTCACATATGGACTTAATTTGAACACAATACAAGCTTGGGTGATGTGGAATCTATGCTACATAGAAAACAAAATTATATCAGTAGAAAGAATGCTTCAATATACGTGCATTCCTAATGAGCCTCCCCTTGTTGTAGAAGAAGATCGACCCAACCCTTCTTGGCCATCATATGGCGAGGTTGATATACAAGATTTGCAGGTTCGTTATGCTCCACATCTTCCACTTGTGTTGCGTGGAATAACGTGTAAGTTTGGTGGAGGATTAAAAACTGGCATTGTTGGGAGAACAGGAAGTGGTAAATCCACCCTTATTCAAACACTTTTCAGAATTGTTGAGCCTACCTGTGGTCAGATCATGATTGACAACATCAACATCTCTTCAATTGGACTTCATGATTTGAGGTCTAAACTAAGCATTATTCCTCAGGATCCAACAATGTTTGAAGGAACTGTGAGAAATAATCTAGACCCTCTGGAAGAGTACACTGATGAACAAATTTGGGAGGCCCTGGATAAGTGCCAACTTGGAGATGAAGTTAGAAAGAAAGAAGGGAAGCTCGACTCCACAGTTACTGAGAATGGTGAGAATTGGAGTATGGGTCAGAGGCAGTTGGTATGCCTTGGCAGGGTGCTTCTGAAGAAAAGCAAGGTTTTGGTGCTTGATGAAGCCACTGCGTCAGTAGATACAGCTACAGATAATTTGATTCAGCAGACTCTTAGGAAACATTTCTCTAACTCTACAGTCATTACCATTGCACATAGAATAACTTCTGTTGTTGACAGTGACATGGTTCTGCTTCTTAGTCAAGGACTTATTGAGGAGTATGACACCCCAACAACTTTGCTAGAGAACAAGTCCTCATCTTTTGCACAACTTGTTGCAGAGTATACCATGCGGTCCAACACCAATTTTGAGAAATTGTAA 4482 0.4087 MNYNVVHFLMHPLFLKPVFLNVLSASLHGLLLLSALLSWLWNKMTFTPGTREEGSIQEEIPNDSKTLFKTTVFCSLAVSAFSFVLCFFNYFYWYASGWSEQNFMTLLDLALKTLAWGVVCLSLHKGYFFFASGEIRFRFSFIFRVWCTFYLVFSCYSFVVDIVDVTEIPTQSLVYDVMSTSAGFLFCYVGYFVKKNGHVNGIEEPLLSDDAKETQDMDNVTPYSHAGVFSILTFSWVGSLVAAGYKKTLDLEDVPQLDIRNSVAGAFPSFRDKLEDDYGANAINSLTTFKLAKSLVMSASKEILFTAFLALLGTVASYVGPYLIDDFVQYLDGQRQNQGYVLVSAFFFAKIVECLSKRQLYFRFQQIGLRIRSLLVAMIYNKVLTLSCQSKQGQSSGEIINLMTVDAERIGVFSWYMHDLWMVALQVSLALLILYKSLGIASFATLVTTIVVMLANVPLGSLQEKFQNKLMESKDIRMKATSEILRNMRILKLQGWEMKFLSKITELRKTEEGWLKSFVYTSAMTSFVFWAAPTFISVVTFGTCMFLGIPLEAGKILSALATFRILQEVIFSLPDTISMIAQTKVSLDRISSFLRLDDLPSDVVEKLPQGSSNTAIEVIDGNFSWDLSSPNPTLQNINFKVFLGMRVAVCGAIGSGKSSLLSCVLGEVPKISGNLMVCGTKAYVAQSPWIQSGTIEHNILFGKHMDRERYEKVLEACSLKKDLEIFSFGDQTIIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGHLCSKTVVYVTHQVEFLPAADLILVMKDGRITQSGKYIDLLKSGTDFMELVGAHKKALSTLYSLDGATTPNEISTLKQEENVSGTHDFKEKEASKDVQNEETHNKSEPQGQLVQEEEREKGKVGFSVYWNYITTAYGGAMVPFILLAQILFQALQIGSNYWMAWATPISTHEQARVEEMTLIGVYVGFAIGSSFCVLVRAMLLVTTGYKTATILFNKMHFCIFRAPMSFFDSTPSGRVLSRASTDQSAVDTIIPYQMASLAFSMIQLLGIITVMSQVAWQVFVVFIPVIAVGIWYQQYYLPAARELARLIGICKAPVIQHLAETISGTSTIRSYDQQSRFRETNMKLTDGYSRPKFSVSGAIEWLRFRLDMLSAITFAFSLLVLISIPPGIIDPGIAGLVVTYGLNLNTIQAWVMWNLCYIENKIISVERMLQYTCIPNEPPLVVEEDRPNPSWPSYGEVDIQDLQVRYAPHLPLVLRGITCKFGGGLKTGIVGRTGSGKSTLIQTLFRIVEPTCGQIMIDNINISSIGLHDLRSKLSIIPQDPTMFEGTVRNNLDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSTVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRKHFSNSTVITIAHRITSVVDSDMVLLLSQGLIEEYDTPTTLLENKSSSFAQLVAEYTMRSNTNFEKL* 1494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0126 1493 MobiDBLite consensus disorder prediction 864 902 - -
Vra4g0126 1493 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 929 1209 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra4g0126 1493 Pfam ABC transporter 1264 1411 IPR003439 GO:0005524
Vra4g0126 1493 Pfam ABC transporter 634 768 IPR003439 GO:0005524
Vra4g0126 1493 SMART AAA_5 643 816 IPR003593 -
Vra4g0126 1493 SMART AAA_5 1272 1465 IPR003593 -
Vra4g0126 1493 MobiDBLite consensus disorder prediction 868 889 - -
Vra4g0126 1493 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 304 582 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra4g0126 1493 Gene3D - 1229 1482 IPR027417 -
Vra4g0126 1493 ProSitePatterns ABC transporters family signature. 741 755 IPR017871 GO:0005524
Vra4g0126 1493 Gene3D - 600 849 IPR027417 -
Vra4g0126 1493 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 105 1492 - -
Vra4g0126 1493 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 105 1492 - -
Vra4g0126 1493 SUPERFAMILY ABC transporter transmembrane region 928 1228 IPR036640 GO:0005524|GO:0016021
Vra4g0126 1493 CDD ABC_6TM_ABCC_D1 305 590 IPR044746 GO:0140359
Vra4g0126 1493 CDD ABCC_MRP_domain1 616 816 - -
Vra4g0126 1493 Pfam ABC transporter transmembrane region 930 1169 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra4g0126 1493 Pfam ABC transporter transmembrane region 304 566 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra4g0126 1493 CDD ABC_6TM_ABCC_D2 927 1221 IPR044726 GO:0140359
Vra4g0126 1493 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 616 839 IPR003439 GO:0005524
Vra4g0126 1493 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1246 1480 IPR003439 GO:0005524
Vra4g0126 1493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1237 1477 IPR027417 -
Vra4g0126 1493 SUPERFAMILY ABC transporter transmembrane region 301 602 IPR036640 GO:0005524|GO:0016021
Vra4g0126 1493 CDD ABCC_MRP_domain2 1244 1464 - -
Vra4g0126 1493 Gene3D ABC transporter type 1, transmembrane domain 889 1227 IPR036640 GO:0005524|GO:0016021
Vra4g0126 1493 Gene3D ABC transporter type 1, transmembrane domain 281 598 IPR036640 GO:0005524|GO:0016021
Vra4g0126 1493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 613 838 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0126 Vra-Chr4 3538180 3544211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0126 616 846 Calmodulin-binding Proteins AT2G36910 28.287 7.60e-22 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0126 - K05666 gmx:100794567 2386.68