Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0122 ATGTCGCGCCAGACGACGACGACGGCGTTCACTAAATCGAAGACTCTGGACAATAAATATATGCTGGGAGATGAGATTGGGAAAGGAGCTTATGGTCGAGTTTACAAAGGTTTGGACCTGGAGAATGGAGATTTTGTTGCCATTAAACAAGTTTCTTTGGAGAATATTGCTCAGGAGGATCTCAACATCATCATGAATCTGAACCACAAAAACATTGTAAAGTATCTTGGATCTTCTAAGACAAAAAGTCACCTGCACATAGTTCTCGAGTATGTGGAAAATGGTTCGCTTGCAAATATTATCAAGCCCAATAAATTTGGACCTTTTCCAGAATCATTGGTTGCGGTATATATAGCCCAGGTGTTGGAAGGTTTGGTTTATCTTCATGAACAAGGAGTTATTCATCGGGATATTAAGGGTGCAAACATACTGACAACTAAGGAGGGTCTTGTGAAACTAGCTGATTTTGGTGTTGCTACAAAGCTAACAGAGGCAGATGTTAACACTCATTCAGTTGTTGGAACACCCTACTGGATGGCCCCTGAGGTTATAGAAATGGCTGGGGTTTGTGCAGCTTCTGACATTTGGAGTGTTGGCTGTACAGTTATTGAACTTCTTACATGTGTACCTCCTTATTATGATTTGCAGCCTATGCCAGCTCTTTTTCGTATTGTCCAGGATGAGCACCCGCCAATTCCCGATAGCCTTTCACCTGATATTACTGATTTTCTGCTTCAATGCTTTAAGAAGGATTCTAGACAAAGGCCTGATGCTAAAACTCTGCTGTCTCACCCCTGGATTCAAAATTGTAGACGTGTTCTGCAGTCTTCTCTTCGTCATAGTGCAACACTAAGAAATATAGAGGAAGATGACTCTGGAGATGCAGAAGATTCTGGTGGTTATCATAAGAGTGCTTATGAAGGCTCTTCTGTGGAGAAAGAGGATTCTGGAAAAGAGCTTTCATCTGTGGCTGCTCAGGGCAGAAAATCTCATGAAGACAATGCTTCAGTTCCTAATTTTTCTGATGAAAGAGCACAAAAAGAAGATCATGTTCCATCAGATCAGGTTCTTACCTTAGCCATTCGTGAGAAGTCACTTCTACAAACTGGATCTAGCAATCTCTCTCCAAATAGAGAAGTTGGTAATTCCGAGCCTACTGGCAATCACGAAATTTCAAATGAAGGACTTCATGAAGTTATGATGAATGGAGAGGTTGGATCACCACAATCGAGAGGAATGGCTAGTAAGGTTGGAGGAAAAGACAGCTCTGTAAACAATGGTAACAAATCATTTGCTTTTGGGCCAAGAGGTCAAGATAATGGTTCCCTCAAGGCAATGAAGATGCCAACCACTGTGGAAGGAAATGAGCTGAGTAGATTTAGTGACCCACCAGGAGATGCCTACCTAGATGATTTATTCCACCCATTAGATAAACAACCTGGCGATGTTGCAGCAGAGGCATCCACATCTACATCCACTTCTCATATGGTTAAAGGTAACACATCTACAACTGATGGTGGGAAAAATGACCTGGCTAAAGAGTTGAGGGCCACAATTGCTCGAAAGCAATGGGAGAAGGAAAGTGAAATTGGACAGGCAAACAGTGGTGGGAATCTTTTGCATCGAGTAATGATAGGTGTTCTAAAAGATGATGTGATTGATATAGATGGTTTGGTCTTTGATGAAAAGCTTCCTGGAGAGAACCTTTTTCCTTTGCAGGCTGTTGAGTTCAGCAAACTAGTTGGTTCATTAAAACCAGAGGAATCAGAAGATGTGATTGTGTCTGCATGTCAGAAACTTATTGGTATATTTAACCAACGCCCAGAGCAGAAGATTGTTTTTGTTACCCAGCATGGTTTACTTCCTCTAACAGATTTGCTAGAAGTTCCTAAAACACGTGTTATATGTTCTGTGCTTCAGCTTATAAATCAAATAGTTAAAGACAACACTGATTTCCTAGAAAATGCATGTCTTGTTGGATTGATTCCTGCAGTCACAAGCTTTGCAGTACCTGATCGTCCCCGCGAGATTCGAATGGAAGCAGCTTATTTTTTACAGCAGCTTTGTCAGTCGAGTTCTCTGACATTACAAATGTTTATAGCTTGCCGTGGAATACCAGTTTTAGTGGGATTTCTTGAGGCCGATTATGCCAAGTACAGGGAGATGGTTCATCTGGCTATTGATGGCATGTGGCAGGTATTTAAGCTTCAGCAGTCAACTCCTAGAAATGATTTTTGCCGGATAGCTGCTAAGAATGGAATACTTCTCAGGCTTATAAATACTCTTTATAGCTTAAATGAGTCAACTCGACTAGCTTCTAGTTCTGCTGGGGGTGGATTTTCAGTTGATGGTTCGACACAACGCCCACGATCTGGTATCTTGGATCCTACACACCCTTATATTAATCAGAAAGAGGCATTGCTATCTTCAGTAGACCAGCAAGATTCCTCTAAAGTGAGACGTGGAGTCCTTGATCATCACTTAGAACAGTCACATCCTTCATCCTCCAATCCTCGAAGATCAGATGCTAACTACTCCATAGATGATGCCATGTCATTGGAGAAGAATTCAACTCAAACACCCAGAGAATCTTCCGCGGGTGCATTGAAAGAGCGAGAGAATATGGATCGTTGGAAAACTGATCCTTCTCGAGCAGATGTGGAATCCAGACAACGTAGCTCCACTAACAGGGCATCAACTGATAGGCCACCAAAATCAACAGAGCCATCATCAAATGGGTTATCAGTGACAGGAGCTACACACCAGGAACAAGTTAGGCCTCTTCTTAGCTTGTTGGACAAAGAGCCACCATCTGGGCGCTTTTCTGGACAGCTCGAGTATGTACGTCAGATGTCAGGATTAGAAAGACATGAAAGTGTACTCCCTTTGTTACATGCATCCGAAAAGAAAACGAATGGTGAACTAGACTTTTTAATGGCAGAATTTGCAGATGTTTCTCAACGTGGAAAGGAAAACGGAAGTCTTGACTCCAGTTCTAGAGTTTCTCATAAAGTCACTCCAAAGAAATTGGGGACTTTCAATTCCAGTGAAGGAGCTGCTTCCACATCTGGGATCGCATCACAGACAGCATCAGGTGTCCTGTCTGGTTCAGGTGTTCTAAATGCTAGACCAGGTAGTGCTACTTCGTCTGGGCTACTTTCCCACATGGTTTCATCACTGAATGCAGAAGTTGCCAGAGAATATCTGGAGAAAGTGGCAGATCTTCTGCTTGAGTTTGCACAAGCTGACACAACAGTGAAATCTTATATGTGTAGCCAAAGCTTGCTCAGTCGTCTTTTCCAGATGTTTAATAGGGTGGAGCCTCCTATTTTGTTGAAGATACTGAAGTGTATTAATCATCTGTCAACTGATCCAAATTGCTTAGAAAATCTTCAGCGCGCTGAAGCAATAAAATACTTGATACCAAATCTTGAACTCAAAGAAGGGTCTCTTGTATCAGAGATACATCACGAGGTCTTAAATGCCCTATTCAATTTATGCAAGATAAATAAGCGAAGACAAGAACAAGCAGCTGAAAATGGAATCATTCCCCATTTAATGCAATTCATTACATCCAATTCTCCCTTGAAACAGTATGCTTTGCCTCTTCTATGTGACATGGCTCATGCATCTCGCAATTCAAGGGAGCAGTTAAGGGCTCATGGTGGTTTGGATGTCTATTTGAACCTTCTTGAGGATGAGCTTTGGTCTGTGACAGCACTAGACTCTATTGCAGTTTGTTTAGCCCATGACAACGATAATAGGAAGGTTGAACAAGCATTGCTGAAAAAGGATGCAGTTCAGAAGCTTGTGAAGTTCTTCCAGTCATGTCCAGAGCGGCATTTTGTGCACATATTGGAGCCATTCTTGAAAATAATCACAAAATCTTCGAGGATTAATACGACATTGGCTATTAATGGGTTAACGCCGTTGCTCATTGCAAGGCTTGATCATCAGGATGCAATAGCTCGTCTAAATTTACTCAGGCTAATAAAGGCCGTTTATGAGCATCACCCTCAGCCCAAGAAGTTGATTGTGGAAAATGATTTACCTGAAAAGCTTCAAAACTTAATAGGGGAACGGAGAGATGGACAAGTGTTGGTTAAACAGATGGCTACCTCATTACTTAAAGCCCTACACATAAACACCGTTTTGTAA 4158 0.4187 MSRQTTTTAFTKSKTLDNKYMLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIAQEDLNIIMNLNHKNIVKYLGSSKTKSHLHIVLEYVENGSLANIIKPNKFGPFPESLVAVYIAQVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLTEADVNTHSVVGTPYWMAPEVIEMAGVCAASDIWSVGCTVIELLTCVPPYYDLQPMPALFRIVQDEHPPIPDSLSPDITDFLLQCFKKDSRQRPDAKTLLSHPWIQNCRRVLQSSLRHSATLRNIEEDDSGDAEDSGGYHKSAYEGSSVEKEDSGKELSSVAAQGRKSHEDNASVPNFSDERAQKEDHVPSDQVLTLAIREKSLLQTGSSNLSPNREVGNSEPTGNHEISNEGLHEVMMNGEVGSPQSRGMASKVGGKDSSVNNGNKSFAFGPRGQDNGSLKAMKMPTTVEGNELSRFSDPPGDAYLDDLFHPLDKQPGDVAAEASTSTSTSHMVKGNTSTTDGGKNDLAKELRATIARKQWEKESEIGQANSGGNLLHRVMIGVLKDDVIDIDGLVFDEKLPGENLFPLQAVEFSKLVGSLKPEESEDVIVSACQKLIGIFNQRPEQKIVFVTQHGLLPLTDLLEVPKTRVICSVLQLINQIVKDNTDFLENACLVGLIPAVTSFAVPDRPREIRMEAAYFLQQLCQSSSLTLQMFIACRGIPVLVGFLEADYAKYREMVHLAIDGMWQVFKLQQSTPRNDFCRIAAKNGILLRLINTLYSLNESTRLASSSAGGGFSVDGSTQRPRSGILDPTHPYINQKEALLSSVDQQDSSKVRRGVLDHHLEQSHPSSSNPRRSDANYSIDDAMSLEKNSTQTPRESSAGALKERENMDRWKTDPSRADVESRQRSSTNRASTDRPPKSTEPSSNGLSVTGATHQEQVRPLLSLLDKEPPSGRFSGQLEYVRQMSGLERHESVLPLLHASEKKTNGELDFLMAEFADVSQRGKENGSLDSSSRVSHKVTPKKLGTFNSSEGAASTSGIASQTASGVLSGSGVLNARPGSATSSGLLSHMVSSLNAEVAREYLEKVADLLLEFAQADTTVKSYMCSQSLLSRLFQMFNRVEPPILLKILKCINHLSTDPNCLENLQRAEAIKYLIPNLELKEGSLVSEIHHEVLNALFNLCKINKRRQEQAAENGIIPHLMQFITSNSPLKQYALPLLCDMAHASRNSREQLRAHGGLDVYLNLLEDELWSVTALDSIAVCLAHDNDNRKVEQALLKKDAVQKLVKFFQSCPERHFVHILEPFLKIITKSSRINTTLAINGLTPLLIARLDHQDAIARLNLLRLIKAVYEHHPQPKKLIVENDLPEKLQNLIGERRDGQVLVKQMATSLLKALHINTVL* 1386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0122 1385 Pfam Protein kinase domain 21 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0122 1385 MobiDBLite consensus disorder prediction 296 319 - -
Vra4g0122 1385 MobiDBLite consensus disorder prediction 368 390 - -
Vra4g0122 1385 MobiDBLite consensus disorder prediction 285 352 - -
Vra4g0122 1385 Gene3D - 569 776 IPR011989 -
Vra4g0122 1385 MobiDBLite consensus disorder prediction 479 509 - -
Vra4g0122 1385 Gene3D - 1040 1382 IPR011989 -
Vra4g0122 1385 MobiDBLite consensus disorder prediction 772 798 - -
Vra4g0122 1385 PANTHER MAP KINASE KINASE KINASE 2 1344 - -
Vra4g0122 1385 SUPERFAMILY ARM repeat 1052 1378 IPR016024 -
Vra4g0122 1385 MobiDBLite consensus disorder prediction 866 891 - -
Vra4g0122 1385 MobiDBLite consensus disorder prediction 852 918 - -
Vra4g0122 1385 ProSiteProfiles Protein kinase domain profile. 20 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0122 1385 MobiDBLite consensus disorder prediction 484 508 - -
Vra4g0122 1385 MobiDBLite consensus disorder prediction 368 444 - -
Vra4g0122 1385 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 2 1344 - -
Vra4g0122 1385 MobiDBLite consensus disorder prediction 335 351 - -
Vra4g0122 1385 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Vra4g0122 1385 SUPERFAMILY Protein kinase-like (PK-like) 17 268 IPR011009 -
Vra4g0122 1385 Gene3D Transferase(Phosphotransferase) domain 1 17 301 - -
Vra4g0122 1385 MobiDBLite consensus disorder prediction 892 918 - -
Vra4g0122 1385 PRINTS Tyrosine kinase catalytic domain signature 89 102 IPR001245 GO:0004672|GO:0006468
Vra4g0122 1385 PRINTS Tyrosine kinase catalytic domain signature 127 145 IPR001245 GO:0004672|GO:0006468
Vra4g0122 1385 PRINTS Tyrosine kinase catalytic domain signature 193 215 IPR001245 GO:0004672|GO:0006468
Vra4g0122 1385 PRINTS Tyrosine kinase catalytic domain signature 236 258 IPR001245 GO:0004672|GO:0006468
Vra4g0122 1385 SUPERFAMILY ARM repeat 578 773 IPR016024 -
Vra4g0122 1385 CDD STKc_Cdc7_like 19 267 - -
Vra4g0122 1385 SMART arm_5 1170 1209 IPR000225 GO:0005515
Vra4g0122 1385 SMART arm_5 1124 1168 IPR000225 GO:0005515
Vra4g0122 1385 SMART arm_5 607 647 IPR000225 GO:0005515
Vra4g0122 1385 SMART serkin_6 20 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0122 1385 MobiDBLite consensus disorder prediction 419 435 - -
Vra4g0122 1385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Vra4g0122 1385 MobiDBLite consensus disorder prediction 772 792 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0122 Vra-Chr4 3376576 3395771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0122 1 1385 MAP Kinase Kinase Kinase AT3G13530 71.560 0.0 1963
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE-Pl Vra4g0122 Pkinase 3.9e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0122 - - gmx:100813256 2487.22