Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0121 ATGTGCTTCTTAGTATCTAGTAATAGTGGAAGAAAGTCAGTAATTTCAATGTACTTGAGGAGAATACAATGCAGGAGAGATCGATTGTGGGCTTTGGTGTTGCAGCCATCAAAATACTTCTTTAGGCCAAGATTCTCTGATCATCAATACTTTCAATCTTTGTCCCCAAAGACTGCTGTGGAAGAGTATGGTTCACATGGCAGGATCATCAGAGAACGTCTTTTAGGTTCATATTCATGTAAACATAGTTCTTCTACAATTACTTTTGCTGCTCGGGACAAAAGGCCTAGTTTATGTCATAACAGTACTCAGTTACGTGCCTATAGTTCTGAAAGTGATGGAAGAAATGCAAGTGAGGATAAACAAGAACATGTTAATGATGGAACCAACTTTGATAACAGGCAGAATCAACAAGAGAAGTTTGGGAAAGAGGTTGAGTACTGCAATGCACATGCACGACTTGGAGAACAGGAACAAGAGGAATGGCTTAATAATCAGAGGCTAACTATAGAAAATAAAAGGAGAGAATCACCATTTTTGACAAGGAGGGATAAGTTTAAAAATGAGTTCAGAAGAAGAATTATTCCTTGGGAAAAAATAAATATTTCCTGGGACACATTTCCTTATCATATTCATGAAAATACAAAAAATCTTCTTGTGGAATGTGCTGCTTCCCATTTGAGACATAATAAGTGTGCTTCAACTTTTGGTACTCGGCTCTCATCTTCAAGTGGGAGAATATTGCTTGAGAGCATTCCTGGCACTGAGCTGTATCGTGAGAGATTGGTTAGAGCTCTTGCACAAGATTTACAAGTTCCTCTTTTAGTGCTCGATAATAGCATCCTTGCTCCTTATGACATTGATGATGATTTATCATCGGTCTACGAGTCTGATGATGATAATGCAGAGTCTGGGAAGGAGGGTTCTCTCGAATCAGAGAATGATGATGATAATGAAGTCAGCAATGAAGAAGAGTGGTTTAGCAGTACAGAGGCAAAGTCAGATGCAAGAGACAATGAAGAGGCTAGCAGTACAGAGATTGTGGCTGGAGAATCTGAGAGTTCCGAATCCTCCAAGTCTAATTCTAATGATACCAAATCTTCTGATAAGTCTGGATGCCAGCTAAAGAAAGGTGACCGTGTGAGGTACACTGGGCCATCTGTTCAAGTTACAGACGAGGATAGACCTTTAACTAATGGTCAGAGAGGAGAGGTATATGAGGTCAATGGCGTTCGAGTTGCAGTCATCTGGGATATTAATGAAGACAAGGTCAACGAGGGTGAGGTGGAGAACCCCAGTGATGATCATACCAAACCCCCGATTTATTGGATTCATGTTAAGGACATTGAGAATGATCTTGATGCTCAATCACAGGATTGCTACATTGCTGTGGAGGCTTTGTGTGAGGTTTTGCGTAGAAAACAGCCTCTTATTGTCTATTTTCCTGACAGTTCACATTGGTTACATAAATCAGTTCCTAAGTCAAACAAAAATGAGTTTTTTCATAAGGTTGAGGAGATGTTTGACCAGTTATCTGGTCCTATAATATTGATTTGTGGGCAAAATAAAGTTCAGTCAGAATCAAATGAGAAAGAACAATTTACAATGATACTACGATACCTTGGACGTGTGGCTAAGTTGCCTCTTTCTCTGAAGCGTTGGGCTGAGCAAATTAAAGGGGACATGACATCAGAAGATGACGAAATTAGCAAGTTCTTTTCTAATGTTCTGAGTATACATCCAGCCGAGGATGAGAATCAGCTGACAACATTCAAGAAACAACTTGAAGAAGATAAAAAAATCGTGACTTCACGTAGTAATTTGAGTATACTACGGAAGGTTCTCGAAGAACATCAGCTATCATGCATTGACCTTTTACATTTAAATACTGATGGCATCGTTTTGACAAAGCTCGAAGCAGAAAAAGTAGTAGGCTGGGCAAAAAATCACTACTTGTCGTCATGCTTGANTCCTTCTGTTAAAGGAGAAAGATTGTNNCTACCTCGTGAAAGTCTTGAAATTGCAGTCTCAAGATTGACAAGCCAGGAAACAATGTCACGGGAGTCTTCTCAGAGCCTCAAGAACCTTGCAAAGGATGAGTATGAGAGCAATTTCATTTCATCTGTAGTACCTCCTGGTGAAATAGGGGTGAAGTTTGATGACGTAGGTGCTCTTGAAGATGTGAAAAAGGCACTTCATGAACTCGTAATTCTTCCAATGAGAAGGCCAGAGCTTTTCTCTCGAGGAAATCTTTTACGGCCCTGTAAAGGAATATTACTTTTTGGTCCTCCTGGCACTGGTAAGACCCTTCTGGCGAAGGCACTTGCAACTGAAGCTGGTGCAAATTTTATTAACATAACTTGTTCGACCCTTACTTCAAAGTGGTTTGGAGAAGATGAAAAACTAACCAAAGCGCTTTTCTCATTTGCCAGCAAACTTGCTCCTGTCATTATATTTATTGATGAAGTTGACAGTTTGCTTGGTGCTAGAGGTGGTGCTTCTGAGCATGAGGCCACCAGAAGAATGAGGAATGAATTCATGGCAGCCTGGGATGGATTGAGGTCAAAAGAACACCAACGAATCCTTATTCTTGGTGCAACAAACCGGCCATTTGATCTTGATGATGCTGTTATTCGTCGTTTACCAAGAAGGATATATGTTGATTTACCCAATGCTGAAAATCGGTTGAAGATTTTAAGCATCTTTCTAGCACAAGAAAATTTGGATTCTGAATTTCAGTTAGACAAACTTGCTAACTTGACTGATGGATACTCGGGAAGCGATTTGAAGAACCTCTGCATTGCTGCAGCGTATAGACCTGTTCAAGAGCTCTTAGAGAATGAAAAGAAGAAAGCCAGTAATGATGGTACAGCTTCAATACTAAGACCTCTCAATTTGGATGATTTTGTTCAGTCAAAAACCAAGGTGGGTCCATCAGTTGCGCATGATGTAACAAGCATGACTGAGTTGAGGAAGTGGAATGAAATGTTTGGAGAAGGTGGTAACAGGACAAAATCACCATTTGGATTTGGGAGCTAA 3039 0.4011 MCFLVSSNSGRKSVISMYLRRIQCRRDRLWALVLQPSKYFFRPRFSDHQYFQSLSPKTAVEEYGSHGRIIRERLLGSYSCKHSSSTITFAARDKRPSLCHNSTQLRAYSSESDGRNASEDKQEHVNDGTNFDNRQNQQEKFGKEVEYCNAHARLGEQEQEEWLNNQRLTIENKRRESPFLTRRDKFKNEFRRRIIPWEKINISWDTFPYHIHENTKNLLVECAASHLRHNKCASTFGTRLSSSSGRILLESIPGTELYRERLVRALAQDLQVPLLVLDNSILAPYDIDDDLSSVYESDDDNAESGKEGSLESENDDDNEVSNEEEWFSSTEAKSDARDNEEASSTEIVAGESESSESSKSNSNDTKSSDKSGCQLKKGDRVRYTGPSVQVTDEDRPLTNGQRGEVYEVNGVRVAVIWDINEDKVNEGEVENPSDDHTKPPIYWIHVKDIENDLDAQSQDCYIAVEALCEVLRRKQPLIVYFPDSSHWLHKSVPKSNKNEFFHKVEEMFDQLSGPIILICGQNKVQSESNEKEQFTMILRYLGRVAKLPLSLKRWAEQIKGDMTSEDDEISKFFSNVLSIHPAEDENQLTTFKKQLEEDKKIVTSRSNLSILRKVLEEHQLSCIDLLHLNTDGIVLTKLEAEKVVGWAKNHYLSSCLXPSVKGERLXLPRESLEIAVSRLTSQETMSRESSQSLKNLAKDEYESNFISSVVPPGEIGVKFDDVGALEDVKKALHELVILPMRRPELFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFINITCSTLTSKWFGEDEKLTKALFSFASKLAPVIIFIDEVDSLLGARGGASEHEATRRMRNEFMAAWDGLRSKEHQRILILGATNRPFDLDDAVIRRLPRRIYVDLPNAENRLKILSIFLAQENLDSEFQLDKLANLTDGYSGSDLKNLCIAAAYRPVQELLENEKKKASNDGTASILRPLNLDDFVQSKTKVGPSVAHDVTSMTELRKWNEMFGEGGNRTKSPFGFGS* 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0121 1012 CDD AAA 756 889 - -
Vra4g0121 1012 Pfam ATPase family associated with various cellular activities (AAA) 758 888 IPR003959 GO:0005524|GO:0016887
Vra4g0121 1012 MobiDBLite consensus disorder prediction 292 401 - -
Vra4g0121 1012 Pfam AAA+ lid domain 913 946 IPR041569 -
Vra4g0121 1012 ProSitePatterns AAA-protein family signature. 861 880 IPR003960 GO:0005524|GO:0016887
Vra4g0121 1012 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 17 1010 - -
Vra4g0121 1012 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 17 1010 - -
Vra4g0121 1012 MobiDBLite consensus disorder prediction 113 128 - -
Vra4g0121 1012 Gene3D - 716 983 IPR027417 -
Vra4g0121 1012 SMART AAA_5 754 891 IPR003593 -
Vra4g0121 1012 Gene3D - 890 974 - -
Vra4g0121 1012 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 716 938 IPR027417 -
Vra4g0121 1012 MobiDBLite consensus disorder prediction 326 344 - -
Vra4g0121 1012 MobiDBLite consensus disorder prediction 109 137 - -
Vra4g0121 1012 MobiDBLite consensus disorder prediction 345 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0121 Vra-Chr4 3357738 3375929 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0121 717 949 Calmodulin-binding Proteins AT3G56690 40.756 9.26e-42 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0121 - - gmx:100812718 1621.29